Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4777 ATGATGTCCAAGAAGAAGTCTAGCTTAGGTCGCCAAAAAATCCCCATTGAGAAAATACCCAAAAAAAGTCATCTCCAAGTCACTTTCTCTAAGCGTCGTTCAGGGCTCTTTAAAAAGGCTAGTGAGCTTTGCACCCTTTGTGGTGTTGAGATTGCGATTGTAGTGTTCTCACCCGCTGATAAAGCATTCTCTTTTGGCCACCCAGAAGTTGAGTCTATCATTGATCGTTATCTGACTCGAAACCCTCCACAAGAGCCTTCTGGTGCTCACCAATTTGTTGAGGCTCATCGAAATGCTAACTTGCGTGATCTCAACATGCAATTGACTCAATTTCTTAACCATTTAGAGATTGAAAAGAAGCAAGGAGATGAGATTGATAATGTGAGGAGGGAGAGGCAGAGGCAATTTTGGTGGGAGAGCCCTGTTGATGAACTTGGCTTGCATGAGTTGATCCAATTGAAGGGTTCTGTTGAGGAGCTTAAGGACAACTTGGGGAAACTTGCTACCAAATTCATTATGGAACAATGCAATAGCAACATATCTTCAGTAAATATTGGGGCTAGTGGACTTGGACTTTATGATGCTTCCTTTGAGAACAAATATGGTGCTACAATTCCTAATGCTTATAATTATCTTGGTTTTCGGCAGGGGAATCTTTAA 660 0.4167 MMSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIIDRYLTRNPPQEPSGAHQFVEAHRNANLRDLNMQLTQFLNHLEIEKKQGDEIDNVRRERQRQFWWESPVDELGLHELIQLKGSVEELKDNLGKLATKFIMEQCNSNISSVNIGASGLGLYDASFENKYGATIPNAYNYLGFRQGNL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4777 219 Gene3D - 21 89 IPR036879 GO:0003677|GO:0046983
Lja1g4777 219 Coils Coil 150 170 - -
Lja1g4777 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Lja1g4777 219 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lja1g4777 219 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Lja1g4777 219 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lja1g4777 219 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lja1g4777 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 180 - -
Lja1g4777 219 PANTHER MADS BOX PROTEIN 8 180 - -
Lja1g4777 219 SUPERFAMILY SRF-like 10 94 IPR036879 GO:0003677|GO:0046983
Lja1g4777 219 CDD MADS_MEF2_like 10 79 IPR033896 GO:0000977|GO:0045944
Lja1g4777 219 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lja1g4777 219 Gene3D - 90 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4777 Lja-Chr1 64649122 64649781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4777 6 196 Type I MADS-box Gene Family AT5G60440 49.495 8.46e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja1g4777 SRF-TF 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4777 - - lja:Lj0g3v0067779.1 332.413