Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4771 ATGGTCTCAAGGGGGAGAATGGGAGCGGCTTCAGAGAAATTGCTACAGGACATGCTGTTGTACGCTGCTAGCGCGGCTCTCAGTTGTTTGGTATTGTTCGTCGGGCTTCGCCAACTCGACCCGAATCGCGAGGCGTCGAAGAAAGCCCTTGAACATAAGAAGGAGATTGCCAAGCGTCTAGGTCGTCCCCTCATTCAAACCAACCCTTACGAGGATGTTATAGCCTGTGATGTTATTAATCCTGACCACATTGATGTGGAATTTGGGTCTATTGGGGGACTGGAATCAATCAAGGAAGCTTTGTTTGAACTTGTTATTCTACCTCTAAAAAGACCTGACTTGTTTTCACATGGTAAGCTTCTTGGACCGCAAAAAGGGGTCCTATTGTATGGACCCCCTGGCACAGGAAAAACCATGCTTGCCAAAGCTATTGCCAAGGAGTCAGGAGCAGTTTTTATTAATGTGAGGATATCAAACCTGATGAGCAAATGGTTTGGGGACGCCCAAAAGCTTGTTGCTGCTGTATTTAGCTTGGCTCATAAACTCCAGCCTGCCATCATATTCATTGATGAAGTTGACAGTTTTCTGGGTCAACGTCGAACAACAGATCATGAAGCTTTGTTGAACATGAAAACTGAGTTCATGGCTCTTTGGGACGGATTTACCACCGATCAGAATGCTCGAGTTATGGTCCTTGCAGCTACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGACGGCTTCCTCAATCCTTTGAAATTGGAATGCCAGACCAGAGTGAGAGGGCAGAGATATTAAAGGTTATCTTAAAGGGTGAGAGGGTTGAAGATAACATAGACTTTGGTCACATAGCTGCCCTATGTGAGGGTTACACTGGTTCAGATCTATTTGATCTATGCAAGAAGGCTGCCTATTTTCCTATTAGAGAACTTCTCGATGATGAGAAGAAAGGGAAACGATCTCCTTTTCAGGCATCTAGACCTCTGTCAGAGTTAGATTTAGCGAAAGCCCTTGCCACTTCACGAAAGACAAAGGTTGCTGCAAATGAATATGGTGGATTAAACCTAAGAGTGCAAGGCGAGTCAGGTGATTATCAGATTCAAGCTGCAATCAATGAATTCTCTAAGCTAGTGGTTTCTCACATGGTTAACCTCCAATCTGATTCTCAGGATCCTTAA 1182 0.445 MVSRGRMGAASEKLLQDMLLYAASAALSCLVLFVGLRQLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFGSIGGLESIKEALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQSFEIGMPDQSERAEILKVILKGERVEDNIDFGHIAALCEGYTGSDLFDLCKKAAYFPIRELLDDEKKGKRSPFQASRPLSELDLAKALATSRKTKVAANEYGGLNLRVQGESGDYQIQAAINEFSKLVVSHMVNLQSDSQDP* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4771 393 Pfam AAA+ lid domain 279 314 IPR041569 -
Lja1g4771 393 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Lja1g4771 393 ProSitePatterns AAA-protein family signature. 229 248 IPR003960 GO:0005524|GO:0016887
Lja1g4771 393 Gene3D - 85 345 IPR027417 -
Lja1g4771 393 SMART AAA_5 123 259 IPR003593 -
Lja1g4771 393 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 10 380 - -
Lja1g4771 393 Pfam ATPase family associated with various cellular activities (AAA) 127 256 IPR003959 GO:0005524|GO:0016887
Lja1g4771 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 314 IPR027417 -
Lja1g4771 393 CDD AAA 92 256 - -
Lja1g4771 393 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 10 380 - -
Lja1g4771 393 Gene3D - 258 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4771 Lja-Chr1 64467181 64476929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4771 44 332 Calmodulin-binding Proteins AT3G56690 32.082 4.52e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4771 K22530 - gmx:100796908 667.922