Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4766 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGGCTGCATAGAGGTCCATGGCTTCCTCGTGAAGATGCACTTCTCACCAAATATATTCGAGATCATGGAGAAGGACAGTGGAGATCATTACCAAAAAGAGCTGGGCTTCTAAGATGCGGAAAGAGTTGCAGATTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGTAACATAACTCCTGATGAAGATGACCTTATAATCAGAATGCATTCTCTTCTTGGAAATAGATGGTCACTCATTGCAGGAAGAATACCCGGGCGAACAGATAATGAGATAAAGAACTACTGGAATACCCACCTCTGTAAAAAGCTCAGAAATCAAGGTACAGATCCAAACACGCACAAGAAGCTACCAGATGATCCTGCTAAAGAGTCAGAAAAGAAGAAGAAGAAGAGAAGTGACAAGAGGAAGAAGAAGAACAGAGCAGAGTCAGAGTCAGAGAGAAACAGAGCAGAGTCAGAGAAGAAGATCTTAGTTTATCTACCAAAACCCACAAGGGTAACATCTCTATCCTCCATTCCCAGAACGGATAGCACATTGACGTTGAATTCCATTAATTCATACAGTGCTGCAGCATCAACAAGCAAAGAGAAAGAAAAAGAGGTGAACTTGGAGGGAGAAAATCAAAATGATGATAATGGGTTTGGATTCTTTGGTGAAATGGAATGCTCCTCTGTTATTCCAGATCATGGGACACTTGAGAAGGTGTATGAAGAGTACTTGCAGCTCTTGAAGGTTGAAGAGAACCATGATCATGATTTAGATTCTTTTGCTGAATCGTTGTTAGCGTAA 828 0.4118 MGRAPCCSKVGLHRGPWLPREDALLTKYIRDHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRMHSLLGNRWSLIAGRIPGRTDNEIKNYWNTHLCKKLRNQGTDPNTHKKLPDDPAKESEKKKKKRSDKRKKKNRAESESERNRAESEKKILVYLPKPTRVTSLSSIPRTDSTLTLNSINSYSAAASTSKEKEKEVNLEGENQNDDNGFGFFGEMECSSVIPDHGTLEKVYEEYLQLLKVEENHDHDLDSFAESLLA* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4766 275 PANTHER MYB TRANSCRIPTION FACTOR 1 263 - -
Lja1g4766 275 SMART sant 13 63 IPR001005 -
Lja1g4766 275 SMART sant 66 114 IPR001005 -
Lja1g4766 275 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g4766 275 MobiDBLite consensus disorder prediction 116 164 - -
Lja1g4766 275 CDD SANT 16 61 IPR001005 -
Lja1g4766 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja1g4766 275 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 263 - -
Lja1g4766 275 Coils Coil 137 166 - -
Lja1g4766 275 Gene3D - 69 162 - -
Lja1g4766 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja1g4766 275 CDD SANT 71 112 IPR001005 -
Lja1g4766 275 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja1g4766 275 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g4766 275 Gene3D - 14 66 - -
Lja1g4766 275 MobiDBLite consensus disorder prediction 120 140 - -
Lja1g4766 275 MobiDBLite consensus disorder prediction 150 164 - -
Lja1g4766 275 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja1g4766 275 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4766 Lja-Chr1 64343870 64345334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4766 4 129 MYB Transcription Factor Family AT3G13540 75.397 6.14e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g4766 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4766 K09422 - gmx:778044 361.303