Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4754 ATGATGGAAGAAGATGAGAATATTCAGGCATCAATAGGAGAAAATGTAGAAAGCTTCACCTGCAGCTTGGAGCCACCTCAAAACTCAAGGAAGAAAAACAGGAAAGTAGAGAACAAGAGGAGATTCAGTGATGAACAGATTAGATCACTAGAATGCATATTTGAGTCAGAGTCAAAGCTGGAACCAAGAAAGAAGATTCAGCTTGCAAAAGATCTTGGATTACAGCCTCGCCAAGTTGCAATATGGTTCCAGAATAGAAGGGCAAGGTGGAAATCAAAAAGGATGGAGAAGGAGTACAGGAAACTCAAAGATGAATATGACAATTTAGCATCAAGGTTTGAGTCCTTAAAGGAAGAGAAGGAGTCTTTGCAATTAGAGTTGCAGAAGCTAAGTTATTTGATGGAAACATCTCATGATGGTGGGAAGGTTGGCAAAGAAAATAGCACAGAAGATGGGGGTTCAGGAAGTGGGTACAGCAATTGCAGGGGTGAAGGAAAGGTAAGGTTTTCAAATGAGGGTTTGGAGGACAGAGTAGGTGTGTATTCAGATGATCAAAATGAAATCAGCAAAAGGGCTGAGAAACCTGACCAACTTCTGAGAATGGATGATGATCATGATGCAGAGACTCCATTCACATCACTTGAAAAATGGTACAGGGTGGACCCAAGTGGGATCTTAGACCAGGCATGTAACAGTTCTCAGTGGTTAGATTTCTGGACTTGA 723 0.4149 MMEEDENIQASIGENVESFTCSLEPPQNSRKKNRKVENKRRFSDEQIRSLECIFESESKLEPRKKIQLAKDLGLQPRQVAIWFQNRRARWKSKRMEKEYRKLKDEYDNLASRFESLKEEKESLQLELQKLSYLMETSHDGGKVGKENSTEDGGSGSGYSNCRGEGKVRFSNEGLEDRVGVYSDDQNEISKRAEKPDQLLRMDDDHDAETPFTSLEKWYRVDPSGILDQACNSSQWLDFWT* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4754 240 PRINTS Lambda-repressor HTH signature 73 89 IPR000047 GO:0003677
Lja1g4754 240 PRINTS Lambda-repressor HTH signature 64 73 IPR000047 GO:0003677
Lja1g4754 240 SMART HOX_1 30 97 IPR001356 GO:0003677
Lja1g4754 240 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 240 - -
Lja1g4754 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 240 IPR045224 GO:0003700
Lja1g4754 240 CDD homeodomain 39 94 IPR001356 GO:0003677
Lja1g4754 240 MobiDBLite consensus disorder prediction 137 164 - -
Lja1g4754 240 ProSitePatterns 'Homeobox' domain signature. 68 91 IPR017970 GO:0000981|GO:0006355
Lja1g4754 240 MobiDBLite consensus disorder prediction 11 27 - -
Lja1g4754 240 MobiDBLite consensus disorder prediction 180 204 - -
Lja1g4754 240 SUPERFAMILY Homeodomain-like 21 93 IPR009057 -
Lja1g4754 240 Coils Coil 85 133 - -
Lja1g4754 240 ProSiteProfiles 'Homeobox' domain profile. 33 93 IPR001356 GO:0003677
Lja1g4754 240 MobiDBLite consensus disorder prediction 1 41 - -
Lja1g4754 240 Pfam Homeobox associated leucine zipper 93 134 IPR003106 GO:0006355|GO:0043565
Lja1g4754 240 Gene3D - 21 99 - -
Lja1g4754 240 Pfam Homeodomain 39 91 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4754 Lja-Chr1 64216215 64218057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4754 30 240 Homeobox Transcription Factor Family AT2G46680 43.404 9.12e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja1g4754 Homeodomain 1.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4754 K09338 - gmx:100499926 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1721 3 19217767 19219439 Lja1g4754 1 64216215 64218057 ECH
Lja1g4754 1 64216215 64218057 Lja1g4754 1 64216215 64218057 ECH