Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4741 ATGCATGCAGATACTGAGACAGACGAAGTATACGTGCAGATGACCTTGCAACATCTGAATCCTGAAGAGCAGGAGGGATACCTTCCAGCAGAGTTGGGGACAGCGAGTAAACAGCCAACAAATTATTTCTGCAAAATTTTGACGGCCAGTGATACAAGCACTCATGGGGGATTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTTTCACAGCAGCCTCCTTGTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGTGGCCAGCCGAAAAGGCATCTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTAGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAATGAATTGCTTCTCGGCATTCGGCATGCTAATAGACCACAACCTATGATGCCTTCATCGGTGCTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAACCCGCGTACTAGCCCATCAGAATTTGTCATACCTTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCTCTTCAGGATGCTATTTGAAACAGAGGAATCTAGTGTGCGGCGGTAG 684 0.4503 MHADTETDEVYVQMTLQHLNPEEQEGYLPAELGTASKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNELLLGIRHANRPQPMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRTSPSEFVIPLAKYVKAVYHTRVSVGMLFRMLFETEESSVRR* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4741 227 CDD B3_DNA 42 138 IPR003340 GO:0003677
Lja1g4741 227 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 227 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja1g4741 227 SMART B3_2 43 145 IPR003340 GO:0003677
Lja1g4741 227 Pfam Auxin response factor 169 227 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja1g4741 227 Pfam B3 DNA binding domain 43 144 IPR003340 GO:0003677
Lja1g4741 227 Gene3D - 41 144 IPR015300 -
Lja1g4741 227 SUPERFAMILY DNA-binding pseudobarrel domain 28 172 IPR015300 -
Lja1g4741 227 PANTHER AUXIN RESPONSE FACTOR 6 1 227 - -
Lja1g4741 227 ProSiteProfiles B3 DNA-binding domain profile. 43 145 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4741 Lja-Chr1 63935632 63938030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4741 1 227 B3 DNA Binding Superfamily AT1G30330 89.912 8.10e-138 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja1g4741 B3 3.5e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4741 - - lja:Lj0g3v0288979.2 441.425