Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4736 ATGTCACAGCCAAGGCAAAACAAGATGATGATGAGTCCAAACACGACCTATTCTAAGATCTTTGTTGGAGGGTTGGCTTGGGAAACCAAGAGAGACACACTGAAACACTATTTTGATCAGTTTGGGGAGATCATAGAGGCTGTTGTCATCACTGAAAGAAATACTGGAAAATCAAAAGGATATGGCTTTGTGACTTTCAAGGACCCAAATTCTGCAACAATGGCTTGCCAGAATCCAAATCCTGTGATTGATGGGAGGAGGGCTAACTGTAATATTGCAGCATTTGGTGCACAAAAAACTGATCCATCAATAACAGGAAGGTACAAATTCAGAAGCCCTTCATGCAATAGTGTACCAATCCAATTTCAAGGCACCTCTACTTATTATGATCAGCATATACCCCAGTATTCATATCAGTATCCACTCTACAGGTATCCTGGTTATCCTCGTCCACAGCATATTCATGACATGAACTACTATAATGCATATGGTGGACAGCAACTTCCATTTCACTATTTTCCAGCATACTGCCAACCCTTTTATGGTCTTAGTAGACAGTTTGTTCCAACAGCATATGTGAAAAAGACACAATTCCCTGAAATATCACCTCAGGAGTTCACAGTTTGCATATCAGAACCGATTTCACCTTCTCTTTCAATTCCCGGCACAGGGTTTATCAAAGAAACAGTAGCTGCAACAGGAGTTGTAAGATCCCCTCCAGAACAGAAATCTTCAGCTTAA 741 0.4089 MSQPRQNKMMMSPNTTYSKIFVGGLAWETKRDTLKHYFDQFGEIIEAVVITERNTGKSKGYGFVTFKDPNSATMACQNPNPVIDGRRANCNIAAFGAQKTDPSITGRYKFRSPSCNSVPIQFQGTSTYYDQHIPQYSYQYPLYRYPGYPRPQHIHDMNYYNAYGGQQLPFHYFPAYCQPFYGLSRQFVPTAYVKKTQFPEISPQEFTVCISEPISPSLSIPGTGFIKETVAATGVVRSPPEQKSSA* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4736 246 SMART rrm1_1 19 91 IPR000504 GO:0003723
Lja1g4736 246 Gene3D - 1 106 IPR012677 -
Lja1g4736 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 95 IPR000504 GO:0003723
Lja1g4736 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 78 IPR000504 GO:0003723
Lja1g4736 246 PANTHER BOULE-RELATED 1 246 IPR037366 GO:0003729
Lja1g4736 246 SUPERFAMILY RNA-binding domain, RBD 10 99 IPR035979 GO:0003676
Lja1g4736 246 CDD RRM_RBM24_RBM38_like 18 93 - -
Lja1g4736 246 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4736 Lja-Chr1 63843091 63847086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4736 20 182 C2H2 Transcription Factor Family AT2G19380 29.341 7.99e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4736 - - gmx:100788634 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4736 1 63843091 63847086 Lja1g4736 1 63843091 63847086 ECH