Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4734 ATGGCGGTTGCTGAGAATGCTGGAGCCAAAATCGGTTCTTCCGGTCAGAATTTGGACAACAACAACACTGTTGTGTCAGCTGAGGACTCAAGTGAGGTGGAGAAATCGAAGACTAGGACCGATCAGAATCTGAGCAACGGTGGTTTCAACCATGAACATCATCCTGGGAACATAGCAGTTCCTAATGGCAACTACAGCTATAATGCTCAAGTGGGTCAGATGCAAGCAAATGGTGTCCAGAACCAGCAGCTTGTGATGAACAATGATGGGTATGGGGAGAATGGGGATGAGAGTTTCAAGCGTGACATGAGGGATTTGGCTGAGCTGTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTGCCCCCTTCACTGACTAATAGCCATGGCTATTTAGCTGGACCTAATGCTGGGTTTGGTTATCCTAACAATTTTATTCTGCAAAATGATTTTGGACAGACTAATAGAAGGAGGAAGAATGTCTATAATTCTGGGAAGAGAAGAATTTTTCATAAGATAGAAATGGAGAAAAGGGATGAGATGATTCGGAGGACTGTTTACGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGCTGGCAGCTCTATTTCTTAACTGTGGCCAGGTGGTTGATTGCCGTGTATGTGGGGATCCTAATTCAATTCTTCGGTTCGCCTTTGTTGAGTTTACAGATGAAGAAGGTGCAAGGACTGCTTTGAACCTGTCTGGAACTATGCTTGGATACTACCCACTGAGAGTGCTGCCTTCGAAAACTGCCATTGCACCTGTTAATCCAACTTTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTACTGCACAAATATTGACAAGAAGCTTACTCAATCTGATGTCAAAAACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGGGATCACAATCATTCAACTCGAATTGCTTTTGTTGAGTTCAAAGTGGCTGAGAGTGCAATTGCTGCTCTGAGTTGCAGTGGTGTGATATTGGGTTCGCTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTCCGGTCTCGCTCTCCTCGTTCTCCAATGCACTGA 1110 0.4459 MAVAENAGAKIGSSGQNLDNNNTVVSAEDSSEVEKSKTRTDQNLSNGGFNHEHHPGNIAVPNGNYSYNAQVGQMQANGVQNQQLVMNNDGYGENGDESFKRDMRDLAELLSKLNPMAEEFVPPSLTNSHGYLAGPNAGFGYPNNFILQNDFGQTNRRRKNVYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4734 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 357 IPR000504 GO:0003723
Lja1g4734 369 CDD RRM2_CID8_like 277 358 IPR034825 -
Lja1g4734 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 350 IPR000504 GO:0003723
Lja1g4734 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 249 IPR000504 GO:0003723
Lja1g4734 369 SUPERFAMILY RNA-binding domain, RBD 179 260 IPR035979 GO:0003676
Lja1g4734 369 CDD RRM1_CID8_like 182 261 IPR034823 -
Lja1g4734 369 Gene3D - 268 365 IPR012677 -
Lja1g4734 369 Gene3D - 148 261 IPR012677 -
Lja1g4734 369 SUPERFAMILY RNA-binding domain, RBD 272 364 IPR035979 GO:0003676
Lja1g4734 369 MobiDBLite consensus disorder prediction 1 56 - -
Lja1g4734 369 Pfam Ataxin-2 C-terminal region 110 124 IPR009818 -
Lja1g4734 369 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 369 - -
Lja1g4734 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 259 IPR000504 GO:0003723
Lja1g4734 369 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 369 - -
Lja1g4734 369 MobiDBLite consensus disorder prediction 10 29 - -
Lja1g4734 369 SMART rrm1_1 282 353 IPR000504 GO:0003723
Lja1g4734 369 SMART rrm1_1 185 255 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4734 Lja-Chr1 63815970 63823409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4734 183 345 Eukaryotic Initiation Factors Gene Family AT1G34140 26.347 1.91e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4734 - - gmx:106794116 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4734 1 63815970 63823409 Lja1g4734 1 63815970 63823409 ECH