LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g4733	ATGGCGGTTGCTGAGAATGCTGGAGCCAAAATCGGTTCTTCCGGTCAGAATTTGGACAACAACAACACTGTTGTGTCAGCTGAGGACTCAAGTGAGGTGGAGAAATCGAAGACTAGGACCGATCAGAATCTGAGCAACGGTGGTTTCAACCATGAACATCATCCTGGGAACATAGCAGTTCCTAATGGCAACTACAGCTATAATGCTCAAGTGGGTCAGATGCAAGCAAATGGTGTCCAGAACCAGCAGCTTGTGATGAACAATGATGGGTATGGGGAGAATGGGGATGAGAGTTTCAAGCGTGACATGAGGGATTTGGCTGAGCTGTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTGCCCCCTTCACTGACTAATAGCCATGGCTATTTAGCTGGACCTAATGCTGGGTTTGGTTATCCTAACAATTTTATTCTGCAAAATGATTTTGGACAGACTAATAGAAGGAGGAAGAATGTCTATAATTCTGGGAAGAGAAGAATTTTTCATAAGATAGAAATGGAGAAAAGGGATGAGATGATTCGGAGGACTGTTTACGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGCTGGCGGCTCTATTTCTTAACTGTGGCCAGGTGGTTGATTGCCGTGTATGTGGGGATCCTAATTCTATTCTTCGGTTCGCCTTTGTTGAGTTTACAGATGAAGAAGGTGCAAGGACTGCTTTGAACCTGTCTGGAACTATGCTTGGATACTACCCACTGAGAGTGCTACCTTCGAAAACTGCCATTGCACCTGTTAATCCAACTTATTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTACTGCACAAATATTGACAAGAAGCTTACTCAATCTGATGTCAAAAACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGGGATCACAATCATTCAACTCGAATTGCTTTTGTTGAGTTCAAAGTGGCTGAGAGTGCAATTGCTGCTCTGAGTTGCAGTGGTGTGATATTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAAACACCAGTACGGTCTCGCTCTCCTCGCTCTCCAATGTCTCGCTATCCTCGTTCTCCAATGCACTGA	1134	0.4453	MAVAENAGAKIGSSGQNLDNNNTVVSAEDSSEVEKSKTRTDQNLSNGGFNHEHHPGNIAVPNGNYSYNAQVGQMQANGVQNQQLVMNNDGYGENGDESFKRDMRDLAELLSKLNPMAEEFVPPSLTNSHGYLAGPNAGFGYPNNFILQNDFGQTNRRRKNVYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRSPRSPMSRYPRSPMH*	378

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g4733	377	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	1	368	-	-
	Lja1g4733	377	MobiDBLite	consensus disorder prediction	354	368	-	-
	Lja1g4733	377	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	281	357	IPR000504	GO:0003723
	Lja1g4733	377	CDD	RRM2_CID8_like	277	358	IPR034825	-
	Lja1g4733	377	CDD	RRM1_CID8_like	182	261	IPR034823	-
	Lja1g4733	377	PANTHER	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE	1	368	-	-
	Lja1g4733	377	MobiDBLite	consensus disorder prediction	1	56	-	-
	Lja1g4733	377	SUPERFAMILY	RNA-binding domain, RBD	179	261	IPR035979	GO:0003676
	Lja1g4733	377	SUPERFAMILY	RNA-binding domain, RBD	271	369	IPR035979	GO:0003676
	Lja1g4733	377	Pfam	Ataxin-2 C-terminal region	110	124	IPR009818	-
	Lja1g4733	377	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	184	259	IPR000504	GO:0003723
	Lja1g4733	377	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	283	350	IPR000504	GO:0003723
	Lja1g4733	377	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	186	249	IPR000504	GO:0003723
	Lja1g4733	377	MobiDBLite	consensus disorder prediction	353	377	-	-
	Lja1g4733	377	MobiDBLite	consensus disorder prediction	10	29	-	-
	Lja1g4733	377	Gene3D	-	148	261	IPR012677	-
	Lja1g4733	377	Gene3D	-	266	365	IPR012677	-
	Lja1g4733	377	SMART	rrm1_1	282	353	IPR000504	GO:0003723
	Lja1g4733	377	SMART	rrm1_1	185	255	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g4733	Lja-Chr1	63790987	63798420	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g4733	183	345	Eukaryotic Initiation Factors Gene Family	AT1G34140	25.749	2.86e-11	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g4733	-		-	gmx:106794116	561.222