Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4732 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCTGGTGATATAAGAGAATCAGAAATTGAAGATATATTCTACAAGTATGGCCGTATAATGGAGATTGAATTGAAGGTTCCTCCTCGACCTCCATGTTATTGCTTTGTCGAGTTTGACAATGCTCGAGATGCAGAAGAAGCTATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGATTAAGGGTTGAGCTTGCTCACGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGGTATGGTGGTGGCCGCGATGGTGGTGATGGACATTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTCCGTGGACTCCCGTCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTATACTAATTATGATGACATGAAGTATGCTGTAACATATTTTTCTGTTTCACATATTCGGAAACTGGATGACACTGAATTCAAAAATCCGTGGGCCAGAGGCTACATTCGGGTAATGAAATCTCTGAGCCGCAGCAGAAGCCTCAGCAGGAGCAGAAGTCCAAAGAGGGTTAGAAGGTCTTTGGACAGATCTGTATCTAGGTCTAGATCTCGATCCAGATCAGCTTCCCGAATCAAATCTTCCAGATCAAAATCACGATCACGGTCTGTATCTCCACGCCAGGCGCCGTCTGGTAGTGGTTGA 771 0.454 MSGRFSRTIYVGNLPGDIRESEIEDIFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGRDGGDGHFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAVTYFSVSHIRKLDDTEFKNPWARGYIRVMKSLSRSRSLSRSRSPKRVRRSLDRSVSRSRSRSRSASRIKSSRSKSRSRSVSPRQAPSGSG* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4732 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 199 IPR000504 GO:0003723
Lja1g4732 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lja1g4732 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 167 IPR000504 GO:0003723
Lja1g4732 256 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 253 - -
Lja1g4732 256 CDD RRM1_SF2_plant_like 8 79 - -
Lja1g4732 256 Gene3D - 113 197 IPR012677 -
Lja1g4732 256 SMART rrm1_1 114 184 IPR000504 GO:0003723
Lja1g4732 256 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lja1g4732 256 MobiDBLite consensus disorder prediction 226 242 - -
Lja1g4732 256 Gene3D - 2 111 IPR012677 -
Lja1g4732 256 MobiDBLite consensus disorder prediction 81 101 - -
Lja1g4732 256 CDD RRM2_SF2_plant_like 113 194 - -
Lja1g4732 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lja1g4732 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 253 - -
Lja1g4732 256 SUPERFAMILY RNA-binding domain, RBD 6 169 IPR035979 GO:0003676
Lja1g4732 256 MobiDBLite consensus disorder prediction 199 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4732 Lja-Chr1 63782906 63788133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4732 9 219 Eukaryotic Initiation Factors Gene Family AT4G34110 26.728 3.30e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4732 K12890 - gmx:100800653 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4732 1 63782906 63788133 Lja1g4732 1 63782906 63788133 ECH