Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4731 ATGTCTGCCGGCGAGTTGGGTTGCATCTACGCCACCTTGATCCTCCACGACGATGGAATCCCCATCACCGCGGAGAAGATCAACACTTTGTTGAAGGCTGCTAATGTCACCGTCGAGTCCTACTGGCCTAGCCTTTTCGCTAAGCTTGCCCAGAACAAGAACGTCGATGACCTCGTTTTGAACGCTGGTGTCGCCAGCGGTGCCGCTGTTGCCGTTTCCGCTCCTGGTGCCGCCGCTGGTGGTGGTGACGCCGCTGCCGCTGCACCTGCTAAGGAGGAGAAGAAGGAAGAGGCAAAGGAAGAAAGTGATGATGACATGGGATTCAGCTTGTTCGATTAG 339 0.5605 MSAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVLNAGVASGAAVAVSAPGAAAGGGDAAAAAPAKEEKKEEAKEESDDDMGFSLFD* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4731 112 Gene3D - 1 63 IPR038716 -
Lja1g4731 112 Pfam 60s Acidic ribosomal protein 22 111 - -
Lja1g4731 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lja1g4731 112 MobiDBLite consensus disorder prediction 75 112 - -
Lja1g4731 112 MobiDBLite consensus disorder prediction 88 106 - -
Lja1g4731 112 CDD Ribosomal_P1 5 61 - -
Lja1g4731 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 112 - -
Lja1g4731 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4731 Lja-Chr1 63776402 63778209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4731 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 55.357 1.11e-37 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4731 K02942 - rcu:8269526 125.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4731 1 63776402 63778209 Lja1g4731 1 63776402 63778209 ECH