Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4726 ATGGTGTTAGCACGCGCTCTGTTCCCAAATCGTTTCTGTTCTTCCCCTTCTTCTATCACCACGTTTCATGCACACCCTCTCAAGCTTCCACACTCCCTTCAACTCCCATCTCATTCACCTTCAACTCAACTCGAAGCTCAGTGCTCGTTCTCCATCTTCCAATGCCGCTTCAGCACCTCCTACGCAAACCCTGAAGCTGGATTCGGGATGCGTATCTCTTTGTTTCAAGAAATGGGTATTGGTTTTGATGAAACCCAAGTGCTCCTGCTCAATAACCCTGACCTTTCATTGTTACCATTGGACTCATTGCGTGCTCGGATTCTTTCTTTGCAGTCTCTGGGATTGGATCGTGTTGCCATGAATCAATTGGTTTCAAAGCGACCATCTGTTATAGCAGCAAAAGAACTTGAACCCCTTTTAAGCTTTTTGAGATATGGGTTACAGGGACAGCTTGAGCAAGCACAGGTTACGCGTCTTCTGTCGGCGGCTGAACCTAGATTATTGGTGGGTTTTCCTCATAAGGTTCAGTTGCTGATTGATAGAGGAGTTCCTGTTGATAAGATTGTCCATGTGCTTAACAATGTGAGTTTGCCAAAGGCATTGTGTAATAGGTCATTGGATGAAATTGGCAAAATGCTAAGTTTCCTTGAACCCTTTGGTGGTGTTAGTCTGATTTTGAAGCGCCCGGCGATTCTCAATTTTGATTTGGATAATCAGCTGATTCCGAGAGTCCAAGTCCTGAGAAAGATTAGTGGAGGAGATGAGGATGGTGTTAGTAAAGTGCTGTATAAGTTCCCTACAATTTTGAGTTATAGTGGGGAGCATGTCATGGGACATGCTAGGTTCCTGAGGGATTTTGCAGGCCTTGAGGACAGTCAGATATTTAGGATAATAACAGTGTTTCCGGCTATCATTACAGCTAGCAGGGAGAGGAAACTGCATCCTAGGATACGATTTCTCAAGGAATGTGGGTTAGATTCTGCGGAGATCTTTAAGTTCTTGAGTAAAGCACCCACTTTTCTAGCACATTCATGGCATGAGAACATTGCCTACAAACTTGTGCTTCTGGTCAAGATTGGATATAAACACAGGACAAAGGACTTGGCAACGGCAATGGCGTCTACTACTAGGACAAGCTGTGAGAACATGCAGAAGGTGGTGAGTCTATTCCTGAATTTTGGGTTTTCATGTGAAGACATTTTTGCTATGAGCAAGAAGCAGCCACAAATACTGCAGTATAATCACACTTCTCTAGAGAAGAAGATGAATTATTTGATTGAGGAGATGAACCGTGACATTGAGGAGTTACTGGTTTTTCCAGCATTTCTTGGTTACAACTTTGATAGCAGAATTAAGCATAGGTTTGAAGAAAAGAAGGGTGTAAGGGGGGAAGGAATGTCTCTCAATAAGCTTTTAACTGTTTCAAGTGATACTTACACCACCGGCAAACGGAAAAAGGTCTCTGCCATAGGATCTGAATTGAAATAA 1488 0.4321 MVLARALFPNRFCSSPSSITTFHAHPLKLPHSLQLPSHSPSTQLEAQCSFSIFQCRFSTSYANPEAGFGMRISLFQEMGIGFDETQVLLLNNPDLSLLPLDSLRARILSLQSLGLDRVAMNQLVSKRPSVIAAKELEPLLSFLRYGLQGQLEQAQVTRLLSAAEPRLLVGFPHKVQLLIDRGVPVDKIVHVLNNVSLPKALCNRSLDEIGKMLSFLEPFGGVSLILKRPAILNFDLDNQLIPRVQVLRKISGGDEDGVSKVLYKFPTILSYSGEHVMGHARFLRDFAGLEDSQIFRIITVFPAIITASRERKLHPRIRFLKECGLDSAEIFKFLSKAPTFLAHSWHENIAYKLVLLVKIGYKHRTKDLATAMASTTRTSCENMQKVVSLFLNFGFSCEDIFAMSKKQPQILQYNHTSLEKKMNYLIEEMNRDIEELLVFPAFLGYNFDSRIKHRFEEKKGVRGEGMSLNKLLTVSSDTYTTGKRKKVSAIGSELK* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4726 495 Pfam mTERF 72 333 IPR003690 GO:0003690|GO:0006355
Lja1g4726 495 Pfam mTERF 316 479 IPR003690 GO:0003690|GO:0006355
Lja1g4726 495 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF8, CHLOROPLASTIC 75 486 - -
Lja1g4726 495 PANTHER CGI-12 PROTEIN-RELATED 75 486 IPR003690 GO:0003690|GO:0006355
Lja1g4726 495 SMART mt_12 86 116 IPR003690 GO:0003690|GO:0006355
Lja1g4726 495 SMART mt_12 433 464 IPR003690 GO:0003690|GO:0006355
Lja1g4726 495 SMART mt_12 401 432 IPR003690 GO:0003690|GO:0006355
Lja1g4726 495 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Lja1g4726 495 SMART mt_12 295 326 IPR003690 GO:0003690|GO:0006355
Lja1g4726 495 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Lja1g4726 495 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Lja1g4726 495 Gene3D Transcription termination factor 3, mitochondrial 283 483 IPR038538 -
Lja1g4726 495 Gene3D Transcription termination factor 3, mitochondrial 150 282 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4726 Lja-Chr1 63697013 63699229 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja1g4726 mTERF 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4726 - - gmx:100799904 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4726 1 63697013 63699229 Lja1g4726 1 63697013 63699229 ECH