Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4721 ATGTATGAAGCGGTGACGAGTGGCGAGAAGGTGGTGGTGGTGGAGGAGGAGAAGCGGAGGGAGGAGGAAGAGGAAGGGAGTGGAGGTGGTGAATTGAAGGGGTTGATGAGGTGGGAGAAGTTTTTGCCGAAAATGGTTCTGAGAGTGCTTTTGGTTGAAGCTGATGATTCTACAAGGCAGATTATAGCGGCGCTTCTCAGGAAATGCAACTTTAAAGTGGCTGCTGTTCCTGATGGCTTGAAGGCATGGGAAATACTCAAGGGAAGACCGAGGAATTTCGATCTAATACTGACTGAAGTGGATTTGCCAGCCATATCTGGTTATGCTCTTCTGACATTGATTATGGAGCATGAGACTTGCAAAAACATCCCTGTCATAATGATGTCCTCACAAGATTCAGTTAGCACGGTATATAAATGCATGTTGAGAGGTGCTGCTGACTATCTTGTTAAGCCCCTTAGAAAGAATGAGCTGAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCTTCAACCGCCAGCGTAAATGCTCCTCAAGATGAGAGTTTTGCACAGCAAAAGGTTGAAGCCACTGCCGAAAACAATGCTGCTAGTAATCGTTCAGGCGGCAATGCTGCTTGCATTCAGAGAAATAAGGAATTAATTGAGAAAGGAAGTGATGCACAGAGTTCATGTACGAAGCCTGAATTGGAAGCTGAGAGTAGTCCTGTCAATGACATGCAAGAATTTTCACCACTGAAATGTGGTGAAGCACATCCAAGTGGAGCAAGGACACAAGATGTGGACACATGCATCCAGTTAGGCCAGACATCCATCACACATGACACTCATGTAGGAGGATTAACTGCACCTATCTGCAAAAATGGCGAGACAAGCACGGCCAATGTCAAGGATGGTGATCCAGAGCATTTTTGGAGCACTAGCAACAGTGGTGAGGCTCATGACAGACACTTTGTTCAAATTAACTCTTCTAGGGAAGCTATTGACTTGATTGGAGCATTCCATACTCATCCAAACTGCACTCTAAAAAATTCCACAGTTAATTCCACTGGGATGTTTGACTTTTCTCCTCAATTGGATCTTTCCCTAAGAGGATCTCATGCCAGCAACTTTGACAAGGAACTCACAGAAGAAAGGCACACCCTCATGCATTCAAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAACTGGAAGCCTCACCTGCAGTGTTAAGTAACTTCTTCAATCAACTAAGAGAACAGAGAACAAATAATGAGAAAATTGTCTCCCACGTTGCTACCGGCTGCAACTCAGATTGTTCAACACCTAGTATGCAAAGATGTATGTTGTCTTCAGCTGCAGCCCAGTCAAAAGAATCTGAGCTTGCAACTTCACACTCCAACCAAGGGCATTCTCTCCCAATTCCTGTAAAGGGCGTAAGGTTCAATGATCTACATACAGCCTATGGTTCTTCACTTCCTCCAGTCTTTCAAACGCAGTCAGGTCCATCACCAATGCCGAGTTCAGTTCTGCTCCTTGAGCCAAACTTCCAAGTAAATGCATTTTACCAGTCAAACGGGAATGAAAACAGTTCAGAGCAGCTACGTGAACATCGGGGTCCATATGGAAACAGCAACCAAGAGCACATTGTGTACCCACAAGAACACAGGTCCGAACGCGCAGAGGATCGAGGGTATATCTCCCCTGCAACTGATCAAAGTGTATCGAGCAATTTCTGTAATGGAAATGCAAACCATCTTAACAGCAATGGTTATGGAAACAATTGTGTAAGTAGCAGCCGTGCTGATCAAGTTGCCACTGTCAGAGCAGCTTCAGATGGTAAGCATGAAGACCTCACAAACAACGGATATACCCATCGATCTATCCAAAGGGAAGCAGCTCTGAACAAGTTCCGCTTGAAACGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAATTAGCAGAGCAACGTCCCAGAGTGAAAGGACAATTTGTTCGTCAAGCGAATCCTGATCCTCTTGCTGCAGAACAAGATGGCCAAGAATATGATCAATAG 2055 0.4491 MYEAVTSGEKVVVVEEEKRREEEEEGSGGGELKGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCNFKVAAVPDGLKAWEILKGRPRNFDLILTEVDLPAISGYALLTLIMEHETCKNIPVIMMSSQDSVSTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTASVNAPQDESFAQQKVEATAENNAASNRSGGNAACIQRNKELIEKGSDAQSSCTKPELEAESSPVNDMQEFSPLKCGEAHPSGARTQDVDTCIQLGQTSITHDTHVGGLTAPICKNGETSTANVKDGDPEHFWSTSNSGEAHDRHFVQINSSREAIDLIGAFHTHPNCTLKNSTVNSTGMFDFSPQLDLSLRGSHASNFDKELTEERHTLMHSNASAFKRYTNRQLEASPAVLSNFFNQLREQRTNNEKIVSHVATGCNSDCSTPSMQRCMLSSAAAQSKESELATSHSNQGHSLPIPVKGVRFNDLHTAYGSSLPPVFQTQSGPSPMPSSVLLLEPNFQVNAFYQSNGNENSSEQLREHRGPYGNSNQEHIVYPQEHRSERAEDRGYISPATDQSVSSNFCNGNANHLNSNGYGNNCVSSSRADQVATVRAASDGKHEDLTNNGYTHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQANPDPLAAEQDGQEYDQ* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4721 684 Pfam Response regulator receiver domain 49 160 IPR001789 GO:0000160
Lja1g4721 684 ProSiteProfiles CCT domain profile. 625 667 IPR010402 GO:0005515
Lja1g4721 684 CDD psREC_PRR 49 152 - -
Lja1g4721 684 MobiDBLite consensus disorder prediction 173 203 - -
Lja1g4721 684 SUPERFAMILY CheY-like 47 179 IPR011006 -
Lja1g4721 684 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 18 658 - -
Lja1g4721 684 MobiDBLite consensus disorder prediction 517 541 - -
Lja1g4721 684 MobiDBLite consensus disorder prediction 650 684 - -
Lja1g4721 684 MobiDBLite consensus disorder prediction 218 238 - -
Lja1g4721 684 Pfam CCT motif 625 667 IPR010402 GO:0005515
Lja1g4721 684 Gene3D - 45 253 - -
Lja1g4721 684 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 658 IPR045279 GO:0009736
Lja1g4721 684 ProSiteProfiles Response regulatory domain profile. 48 166 IPR001789 GO:0000160
Lja1g4721 684 SMART REC_2 47 162 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4721 Lja-Chr1 63403807 63408442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4721 326 668 Response Regulator Gene Family AT5G24470 30.601 1.13e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lja1g4721 Response_reg 1.3e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4721 K12130 - gmx:100777119 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4721 1 63403807 63408442 Lja1g4721 1 63403807 63408442 ECH