Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4712 ATGGGTTCAACCGGTGAAACCCAGATAACCCCAACCCATGTCTCCGACGAAGAAGCGAACCTCTTCGCCATGCAATTAGCCAGCGCCTCTGTTCTCCCCATGGTTCTGAAATCAGCCATTGAGCTTGATCTCTTGGAGTTCATAGCCAAGGCTGGCACCGGAGCTCAGCTTTCCCCAGCTGAAATAGCTTCTCAGCTTCCCACAACCAACCCTGACGCGCCCACCGTGCTCGACCGCATGCTCCGCCTCTTGGCCTGCTACAACATCCTCACTTGCTCTGTTCGAACTGAACAGGATGGGAAGGTGCAGAGGCTGTATGGTCTTGCCCCTGTTGCCAAGTACTTGGTTAAGAATGAAGATGGTGTTTCGATTTCTGCTCTTAATCTTATGAATCAGGACAAGGTTCTCATGGAAAGCTGGTACCACTTGAAAGATGCAGTTCTTGAAGGGGGCATTCCATTTAACAAGGCATATGGAATGACAGCCTTTGAGTACCATGGGACAGATCCAAGGTTTAACAAGGTTTTCAACAAGGGAATGTCAGATCACTCTACCATCACAATGAAGAAAATTCTTGAGACCTACACAGGCTTTGAGGGTCTTAAATCTCTGGTTGATGTAGGTGGTGGAACTGGAGCTGTAATCAACATGATTGTCTCAAAGTATCCGACTATAAAGGGCATCAATTTTGATTTGCCCCATGTCATTGAAGATGCTCCATCTTATCCAGGAGTGGAGCATGTTGGTGGAGACATGTTTGTCAGTGTCCCAAAAGCTGATGCCGTTTTCATGAAGTGGATTTGTCATGATTGGAGTGATGAGCACTGCTTGAAGTTTTTGAAGAACTGCTACGAGGCACTCCCAGACAACGGGAAAGTGATTGTGGCAGAATGCATTCTTCCAGTGGCTCCAGACTCTAGCTTAGCTACAAAAGGTGTGGTTCACATTGATGTCATCATGTTGGCTCACAATCCAGGAGGGAAAGAGAGAACAGAGAAAGAGTTTGAGGCTCTTGCTAAGGGTGCTGGATTCCAAGGATTCCAAGTCCTGTGTTGCGCTTTCAACTCTTATGTCATGGAATTTCTCAAGAAGGTTTAG 1098 0.4699 MGSTGETQITPTHVSDEEANLFAMQLASASVLPMVLKSAIELDLLEFIAKAGTGAQLSPAEIASQLPTTNPDAPTVLDRMLRLLACYNILTCSVRTEQDGKVQRLYGLAPVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINMIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEKEFEALAKGAGFQGFQVLCCAFNSYVMEFLKKV* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4712 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 363 IPR016461 GO:0008168
Lja1g4712 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 360 IPR029063 -
Lja1g4712 365 CDD AdoMet_MTases 204 295 - -
Lja1g4712 365 SUPERFAMILY "Winged helix" DNA-binding domain 15 119 IPR036390 -
Lja1g4712 365 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171
Lja1g4712 365 PANTHER O-METHYLTRANSFERASE 1 364 IPR016461 GO:0008168
Lja1g4712 365 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Lja1g4712 365 PANTHER BNAA10G07270D PROTEIN 1 364 - -
Lja1g4712 365 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Lja1g4712 365 Gene3D - 1 115 IPR036388 -
Lja1g4712 365 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4712 Lja-Chr1 63032029 63036304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4712 1 365 Monolignol Biosynthesis Gene Families AT5G54160 76.986 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4712 K13066 - gmx:100780100 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4712 1 63032029 63036304 Lja1g4712 1 63032029 63036304 ECH