Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4700 ATGGGTGTGGTTGAGACGGCGATGCCGGTGTTGTCTCTGAATTCTTTGCCGTTAGGGTTCCGATTCCAGCCATCGGATGAGGACATCATCGATTTATACCTCCGGCAGAAGATCAACAATAATGGTGATGATGTTTGGGTTATCCGAGAAATCGATGTCTGCAAATGGGAGCCCTGGGAGTTACCTGGACATGGGTATTGGAAGGCAACGGGCATTGATCGTAAAATCAAGTCTGGGTCCAGCTTGATTGGAATGAAGAAGACTTTGGTATTCTATCATGGTCGTGCACCCAAAGGGAAGAGGACCAACTGGGTGATGCATGAGTACCGGACCACCCTGCAGGAGCTTGATGGCACCAATCCTGGACAGAATCCATATGTCATTTGTCGATTATTTAAGAAACAAGATGAGAGCATTGAAGTTTCAAACTGTGGTGAAGTGGAGAAGACAGCTTCAACTCCTATGGCTGCCAAGTATTCTCCTGAAGATGTACAATCCGATACTCCTCTACCTCCTGTTGCTGTATCCTCATCACTGCTTACAGAAGATAAGACCCAGGCAATTATCCGTGAGACCTCTGAGGAAACAACATCCAACATTATAACACCAGTTGATCGCAATAGTGATGAATATGATGCTCATAATGCCCAACCTCAGAATGTAAAACTGGCTCTAGAGGAGAATCAGCTGTTGAACTCGGACATATTTTCTGATCTAGAAAATGATCTATTTGATGACATATTATTCTCCCCGGCACTTGTGCATCTTCCACAAGTATTTGATTATCAAGCAAGCAATGAACCAGATGGTCTAAGTGGGCTTCAATATGGTACAAATGAGACAGGTATTTCAGACCTTTTCGAGTCACTTACTTCGGATCAACTCTCCTATGAGGAGACCGGAAGTCAACCAATGAACTACCCCTTGTTTAATGTTAAGGACAGCGGATGGGGTAGTGACTCAGATTTAAAAGTAACCAATATGCCTTCTATGCAAGTTCCATATCCTGAGGAGGCAATGGACAGGAATGTTCCTTTGGGGACAGCGCCAGAGTTTTTCAGCACCGTTGGCGTCCCCTTTGACCATAGTGCCGTTGAGCAGAAGGGAAATGTTGGGTTATTTCAAAATCAAAATGATGCCCAGATGACCTTTTCATCCGATGTTAGCATGGGCCAAGTGAGCAATGTAGTTAATGATTATGAGGAACCAAGAAATTGTAATGTATCTGCTGATGGTGATACTGGAATCATAAGAAGGGCTCGACGACCGCAAAATGAACTTGTGAACACAAACATAAATCAAGGTTCTGCAAATAGTCTTGCTGCTGATGAAGATGATACTCTTAGTAATCATGTGAAAGCAATGCTGAAGACACCTAAGTCAACAAACAATAGAAAGATTTATCAACGAGGTTCAAATGCAGGTTCCTCCACCAAGGTGTTAATAGACTTGTTACTGCTCAGAAGGGTGCCTTGCATATCAAAAGCTTCTTCTAATCGTGCTGGCTGGACTTGCTTAGATCATTACAAGACAAAAGGAAGAAACTTCAATGGTCTTTTCTTACCTTGTAAGAAAAAATATTACATTGCACGGGATGTACTTGTTTTCTACCCACAAAACCCCAATAAGTCCGGACGGAGGTACCATAATTGGGTGGCGATGGTGAAAATCACTCAGACTCAGGTGCAAAAGAAATTCCCCATGGACTTTCTTGTTGGGAAGCCTCGAAGATTGTCATTTTATAAGCACGTGGTAGCTAATGGAGAATAA 1770 0.4305 MGVVETAMPVLSLNSLPLGFRFQPSDEDIIDLYLRQKINNNGDDVWVIREIDVCKWEPWELPGHGYWKATGIDRKIKSGSSLIGMKKTLVFYHGRAPKGKRTNWVMHEYRTTLQELDGTNPGQNPYVICRLFKKQDESIEVSNCGEVEKTASTPMAAKYSPEDVQSDTPLPPVAVSSSLLTEDKTQAIIRETSEETTSNIITPVDRNSDEYDAHNAQPQNVKLALEENQLLNSDIFSDLENDLFDDILFSPALVHLPQVFDYQASNEPDGLSGLQYGTNETGISDLFESLTSDQLSYEETGSQPMNYPLFNVKDSGWGSDSDLKVTNMPSMQVPYPEEAMDRNVPLGTAPEFFSTVGVPFDHSAVEQKGNVGLFQNQNDAQMTFSSDVSMGQVSNVVNDYEEPRNCNVSADGDTGIIRRARRPQNELVNTNINQGSANSLAADEDDTLSNHVKAMLKTPKSTNNRKIYQRGSNAGSSTKVLIDLLLLRRVPCISKASSNRAGWTCLDHYKTKGRNFNGLFLPCKKKYYIARDVLVFYPQNPNKSGRRYHNWVAMVKITQTQVQKKFPMDFLVGKPRRLSFYKHVVANGE* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4700 589 Gene3D NAC domain 25 63 IPR036093 GO:0003677|GO:0006355
Lja1g4700 589 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 62 - -
Lja1g4700 589 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 64 430 - -
Lja1g4700 589 Gene3D NAC domain 64 139 IPR036093 GO:0003677|GO:0006355
Lja1g4700 589 ProSiteProfiles NAC domain profile. 1 134 IPR003441 GO:0003677|GO:0006355
Lja1g4700 589 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 9 62 - -
Lja1g4700 589 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 64 430 - -
Lja1g4700 589 Pfam No apical meristem (NAM) protein 17 64 IPR003441 GO:0003677|GO:0006355
Lja1g4700 589 Pfam No apical meristem (NAM) protein 64 110 IPR003441 GO:0003677|GO:0006355
Lja1g4700 589 SUPERFAMILY NAC domain 8 134 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4700 Lja-Chr1 62140471 62146442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4700 8 175 NAC Transcription Factor Family AT4G35580 52.451 3.33e-59 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g4700 NAM 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4700 - - lja:Lj1g3v1091120.2 679.863