Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4697 ATGGGTGCGGTTGAGACGGCGGTGCCGGTGTTGTCTCTGAATTCTCTGCCGACTGGGTTCCGATTCCGGCCATCGGATGAGGAGATCATCGATTTCTACCTCCGGCAGAAGATCAACGGTAATGGTGATGAGGTTTGGGTTATCCGTGAGATTGATGTCTGCAAATGGGAGCCTTGGGATTTGCCCGATTTGTCAGTGATAAGGAACAGGGACCCAGAATGGTTCTTCTTCTGTCCACAGGACAGGAAGTATCCGAACGGGAATCGATTGAACCGAGCAACGATACTTGGGTATTGGAAGGCAACGGGCAAGGATCGTAAAATTAAGTCTGGGTCCAGCTTGATTGGAATGAAGAAGACTTTGGTATTCTATCATGGTCGTGCACCCAAAGGGAAGAGGACCAATTGGGTGATGCATGAGTACCGGCCCACCCTGCAGGAGCTTGATGGCACCAATCCTGGACAGAATCCATATGTCATTTGTCGATTATTTAAGAAACAAGATGAGAGCATTGAAGTTTCAATCAGTGGTGAAGCAGAGCAGACAGCTTCAACTCCTATGGCTGCCAAGTATTCTCCTGAAGAAGTACAATCCGATACTCCTCTACCTCTTGTTGCTGTATCCTCGTCACTGCTTACAGAAGATGATAAGCACCAGGCAATTATCCCTGAGACCTCTGAGGAAACAACATCCAACATTATAACCCCGGTTGATCGCAATAGTGACAGATATGATGCTCAAAATGCCCAACCTCAGAATGTAAAACTAGCTGCAGAGGAGAATCAGCCGTTGAACTTGGACATGTATAATGATCTAAAAAATGATATATTTGATGACAAATTATTCTCCCCGGCACTTGTGCATCTTCCACCAGTATTTGATTATCAAGCAAGCAATGAACCAGATGACCGAAGTGGCCTTCAATATGGTACAAATGAGACGGCTATTTCAGACCTTTTTGATTCACTTACCTGGGATCAACTCTCCTATGAGGAGTCTGGAAGTCAACCAATGAATTTCCCCTTGTTTAATGTTAAGGACAGTGGATCGGGTAGTGACTCAGATTTCGAAATAACCAATATGCCTTCTATGCAAATTCCGTATCCTGAGGAGGCAATTGACATGAAGATTCCTTTGGGGACAGCGCCAGAGTTTTTCAGCCCCGTTGGCGTCCCCTTTGACCATAGTGGCGATGAGCAGAAGAGCAATGTTGGGTTATTTCAAAATCAAAATGCTGCCCAGATGACCTTTTCATCCGATGTTAGTATGGGCCAAGTGTACAACGTTGTGAATGATTATGAGCAACCGAGAAATTGGAATGTAGCTACTGGTGGTGATACTGGAATCATAATAAGGGCTCGACAAGCGCAAAATGAACTTGTGAACACAAACATAAATCAAGGTTCTGCAAATAGGAGAATCCGTTTGTTAAAGAGCGCACACGGCTCAAGTCGGGTGGTGAAAGGTGGGAGACGTGCACAAGAAGATCGTAATTCAAAACCAATCACTGCAGTGGAGAAGAAAGCTTCAGAAAGTCTTGCTGCTGATGAAGATGATACTCTTACTAATCATGTGAAAGCAATGCCAAAGACACCTAAGTCAACAAACAATAGAAAGATTTATCAAAGAGGTTCAAATGCAGGTTCCTCCACCAAGGTGTTGAAAGACTTGTTACTGCTCAGAAGGGTGCCTTGCATATCAAAAGCTTCTTCCAATCGCGCTATGTGGTCTTCTGTTTTTGTAGTTTCTGCCTTTGTGATGGTCTCAGTAATGGTCTTTAGTCTTTACTAA 1791 0.4439 MGAVETAVPVLSLNSLPTGFRFRPSDEEIIDFYLRQKINGNGDEVWVIREIDVCKWEPWDLPDLSVIRNRDPEWFFFCPQDRKYPNGNRLNRATILGYWKATGKDRKIKSGSSLIGMKKTLVFYHGRAPKGKRTNWVMHEYRPTLQELDGTNPGQNPYVICRLFKKQDESIEVSISGEAEQTASTPMAAKYSPEEVQSDTPLPLVAVSSSLLTEDDKHQAIIPETSEETTSNIITPVDRNSDRYDAQNAQPQNVKLAAEENQPLNLDMYNDLKNDIFDDKLFSPALVHLPPVFDYQASNEPDDRSGLQYGTNETAISDLFDSLTWDQLSYEESGSQPMNFPLFNVKDSGSGSDSDFEITNMPSMQIPYPEEAIDMKIPLGTAPEFFSPVGVPFDHSGDEQKSNVGLFQNQNAAQMTFSSDVSMGQVYNVVNDYEQPRNWNVATGGDTGIIIRARQAQNELVNTNINQGSANRRIRLLKSAHGSSRVVKGGRRAQEDRNSKPITAVEKKASESLAADEDDTLTNHVKAMPKTPKSTNNRKIYQRGSNAGSSTKVLKDLLLLRRVPCISKASSNRAMWSSVFVVSAFVMVSVMVFSLY* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4697 596 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Lja1g4697 596 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 11 464 - -
Lja1g4697 596 MobiDBLite consensus disorder prediction 527 545 - -
Lja1g4697 596 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 464 - -
Lja1g4697 596 Gene3D NAC domain 25 171 IPR036093 GO:0003677|GO:0006355
Lja1g4697 596 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Lja1g4697 596 SUPERFAMILY NAC domain 11 166 IPR036093 GO:0003677|GO:0006355
Lja1g4697 596 MobiDBLite consensus disorder prediction 526 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4697 Lja-Chr1 62124600 62129726 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4697 1 199 NAC Transcription Factor Family AT4G35580 67.337 1.91e-89 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g4697 NAM 2.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4697 - - gmx:100777071 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4697 1 62124600 62129726 Lja1g4697 1 62124600 62129726 ECH