Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4696 ATGGTGATGGGCTTAAGGTGTTTGTCAGACTCTTCCACCCAAGAAGCCTTTCAGAGACCAAGGGGAAGACCCTTTGGTTATAAGAACAAGCCCAAGTCACTAATGGTGACGAAGAAAGAGTCTGAAAACCACCTTAAGCCCATCACTATCGAAATACCTTATGGAAATGATGTTATTGCAACAATTGTCAACTTTGCCAACAGCCGCCAAACCAACATCCTCGAAGCTTCGGGCGTCGTGTCTGATATTCTTATTCTCCATCCTCAAACCCACAATGGCCTTGTTTTTCCCAATCGCGGAGTCTATGAAATAATTTCTCTCAATGGCACCTACATATATTCCCATTTCCCTTCCTCATCCACCATCGCTAGTGACCTTCCATATCGAAATAACTTCATGATTTACTTCTCTATAGTTCAAGGTGTCTCCTATGGTGGGTTTGTTGCAGGGAAGCTCATAGCTTCAAGTGTTGTTGTGGTCACGGTTGGAGTATTCAAGATTCTTGAATAA 510 0.4314 MVMGLRCLSDSSTQEAFQRPRGRPFGYKNKPKSLMVTKKESENHLKPITIEIPYGNDVIATIVNFANSRQTNILEASGVVSDILILHPQTHNGLVFPNRGVYEIISLNGTYIYSHFPSSSTIASDLPYRNNFMIYFSIVQGVSYGGFVAGKLIASSVVVVTVGVFKILE* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4696 169 Gene3D - 46 169 - -
Lja1g4696 169 SUPERFAMILY AF0104/ALDC/Ptd012-like 43 165 - -
Lja1g4696 169 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g4696 169 CDD DUF296 46 155 IPR005175 -
Lja1g4696 169 ProSiteProfiles PPC domain profile profile. 42 169 IPR005175 -
Lja1g4696 169 Pfam Plants and Prokaryotes Conserved (PCC) domain 46 165 IPR005175 -
Lja1g4696 169 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 166 IPR014476 GO:0003680
Lja1g4696 169 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4696 Lja-Chr1 62097962 62098471 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4696 10 165 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 31.447 1.01e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4696 - - lja:Lj1g3v1091170.1 330.102