LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g4687	ATGGCCACTGGGGAAGGAGAAAGAAAGATTGATAATGCAGAAGATTTTTTGCAGGTGAACGAGGAGTCCGATAGTGATGATGAGAATGAGACTTCTGGTAGTGAGGAAATTGAAGACTTCTGTGATGGTGAAGATGCTGTGCAATCCATTGGAGAAACTTGTACAATTCCCATAGATGGTGTTGAAGATATGGGTAACATCAATTTCGTCACTTTAACATTTGAAGACATGAAGAAATACAGGTTTTTAAATCGCAATGTTGCCTACGATTTTTACAATATGTATGCTCGCTTTAATGGATTTTCTGCCCGTCGGAGCGTTGTCAAGAAAAACTTTAAGGGAGAAATTGTGCAGCAGAATTTTGTTTGTCATAAACAAGGTCACAGAGAAGATAGATTTGGGGAAGATGGAGTTCGCAAGCGTGAACCTAGGAGGGACATTAGTGGCTGCTCTCCAGGACCTATACAGAACCTTGAACTACCCACCAGAGCTTCAAGGATGGAATGGATGAAATCATTGTTATTAACTTATGGGAAACATCAATCAGGTCACCCTCGCATCATTCACCGAGACATAAAGGGTGCAAACATTCTAATTGAAAACAACTTTGATGCCAAAATTTTGGATTGGCAAAGTTTAATCAAGACACTAACACATGTTTCTACTTGTGTGATGGGAACATTTGGGTATTTGGCTCCTGAGTATGCATCAAGTGGCAAATTAACTGTGAAATCTGATGTTTTCTCATTTGGTATCATGCTATTGGAGCTCATTACAGGACGACGGCCGGTAGACAACACTGGTGATTATGAAGAGGATAGTTTGGTTGATTGGGTAAATTACTTCAAAGTTCTGAGCTCATTTGCCATTCTTGTGTGGAGTCCTTTAGCATGCTCTGGGTCATCACAAGCTGAAGCTCTTAAGCAACTGGGTCAGAACTTCAATGGTAGTTCTATCAGTTCTTCCCATAGTCCTGGAAGGATGTATATAGGAACTATGATGACAACAACATCAGTAAATACTCTTAAGCATGACCATGGCTCTGAGCTTGGTCATGACTACATTGACAGTGGATATGGCTACTATGAAAATTATGGCAGTGAATATGCTTTTGGAGGTTATCATGGTGCTTTGGAGGATGTGATTTCTAACAACATAGTTGGTGAGATACCATATAGTTTGCCACCCAATGCCACACATATGTGGACTATTAATGCTAAGGAATCTATTGAGGGCTTTGGAGAAACTGAAATGAATGAATGGGATCAACTAACAGTCTGTCGATATTCTGCATTGCTTGCAAGTTGTAGAAACCTGTGCAAACTTGCTTGTCGCACAAGTGCACAATTTCTAGAGACCAAATCACTTGTATTTGAGCACTGTAAAAGACTGAGCAGTAATTCACAGGTTGACGTGACAGCTGGAGATGGTGCTGCTGACCATGGTGCAACAGTTGATGAGGGACAGGGTGAGGAAGGTGAAGAGAGGCACATTAGGAATCCTGATGTTGTCAGATCTAAAGGATGTGGGGCCATTATCTCTCAACGGTCAATGAAAGGTAAGCGTACTCTTCGCTGTGGTATCTGTGGCAAGCCAGGACACAACCGCACAACATGCACACGTAGAGATGGCCAAACGTCTACTCAACTAGGAACTCAACAAGGAACTTAG	1671	0.4171	MATGEGERKIDNAEDFLQVNEESDSDDENETSGSEEIEDFCDGEDAVQSIGETCTIPIDGVEDMGNINFVTLTFEDMKKYRFLNRNVAYDFYNMYARFNGFSARRSVVKKNFKGEIVQQNFVCHKQGHREDRFGEDGVRKREPRRDISGCSPGPIQNLELPTRASRMEWMKSLLLTYGKHQSGHPRIIHRDIKGANILIENNFDAKILDWQSLIKTLTHVSTCVMGTFGYLAPEYASSGKLTVKSDVFSFGIMLLELITGRRPVDNTGDYEEDSLVDWVNYFKVLSSFAILVWSPLACSGSSQAEALKQLGQNFNGSSISSSHSPGRMYIGTMMTTTSVNTLKHDHGSELGHDYIDSGYGYYENYGSEYAFGGYHGALEDVISNNIVGEIPYSLPPNATHMWTINAKESIEGFGETEMNEWDQLTVCRYSALLASCRNLCKLACRTSAQFLETKSLVFEHCKRLSSNSQVDVTAGDGAADHGATVDEGQGEEGEERHIRNPDVVRSKGCGAIISQRSMKGKRTLRCGICGKPGHNRTTCTRRDGQTSTQLGTQQGT*	557

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g4687	556	ProSiteProfiles	Protein kinase domain profile.	1	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja1g4687	556	MobiDBLite	consensus disorder prediction	17	36	-	-
	Lja1g4687	556	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	180	281	-	-
	Lja1g4687	556	SUPERFAMILY	Protein kinase-like (PK-like)	184	283	IPR011009	-
	Lja1g4687	556	MobiDBLite	consensus disorder prediction	472	499	-	-
	Lja1g4687	556	Pfam	FAR1 DNA-binding domain	90	142	IPR004330	-
	Lja1g4687	556	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	180	281	-	-
	Lja1g4687	556	MobiDBLite	consensus disorder prediction	485	499	-	-
	Lja1g4687	556	MobiDBLite	consensus disorder prediction	1	36	-	-
	Lja1g4687	556	MobiDBLite	consensus disorder prediction	132	147	-	-
	Lja1g4687	556	MobiDBLite	consensus disorder prediction	132	152	-	-
	Lja1g4687	556	Pfam	Protein kinase domain	186	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja1g4687	556	MobiDBLite	consensus disorder prediction	1	16	-	-
	Lja1g4687	556	SMART	serkin_6	74	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja1g4687	556	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	187	199	IPR008271	GO:0004672\|GO:0006468
	Lja1g4687	556	Gene3D	Transferase(Phosphotransferase) domain 1	163	313	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g4687	Lja-Chr1	61837918	61845899	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g4687	180	281	Trihelix Transcription Factor Family	AT1G26150	63.810	3.55e-35	138

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Lja1g4687		Pkinase	1.4e-18	CL0016
	TF	FAR1	Lja1g4687		Pkinase	1.4e-18	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g4687	-		-	lja:Lj1g3v4694300.1	306.219