Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4678 ATGGCTCCTCAAAAAATGGTGCAAATGGTGAATAATACGGTAGAAGAAGATGGTGGTGATGATGAGCCAAGGAAGAACGTGGTGAGAGCCTTGCCATTCTTTACACTGTTGAGCTATGCTGACTTAGTGGACTGGATTCTGATGGGTTTGGGAACTCTAGGTTCGATTGTGCATGGCATGGCTCTTCCTGTTGGGTATCTCTTGTTGGGAAAAGCTCTTAATGCTTTTGGGAACAATATTGATGACCAAGATGCCATGGTCGCTGCACTTAAGAAGGTTGTTCCATTTGTGTGGTACATGGCAATCGCCACATTTCCTGCTGGGGTACTTGAGATTGGGTGTTGGATGTATGCAAGTGAAAGACAGTTATCACGCCTAAGATTAGCATATCTACAAGCAGTCCTTAGCCAAGAGATAGGGGCTTTTGATACAGAACTAACAAGTGGCAAAGTCATCACTGGAATAAGCAACCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTTGGTCACTTCACCTCTAGTTGTGCAACTTTCTTTGCTGGAATTGTGATTGCTGCTGTATGCTGTTGGGAAGTGGCGCTTTTGTGTTTAGTGGTTGTCCCTCTTATCCTTATGATTGGAGCAATTTACACCAAGAAAATGAACACCATATCAACCACCAAATTGTTTTACCAATCTGAAGCCACATCTATGATAGAGCAGACAATATCACATATAAAAACAGTATATGCTTTTGTTGGAGAGGGAAGTGCAATCAAATCCTTCACAGAGAACATGGACAAACAGTACATGATAAGCAAAGGCGAGGCACTTGTGAAGGGAGTGGGAACAGGGATGTTTCAAACAGTGAGTTTCTGCTCTTGGGCTATCATTGTATGGGTTGGAGCTGTTGTGGTCACAGCTGGGAGAGCAAAAGGAGGAGATATCATAGCTGCAGTGATGAGTATTCTCTTTGGTGCAATATCTCTCACTTATGCAGCACCAGACATGCAAACATTCAATCAAGCAAAAGCTGCAGGGTATGAGGTTTTCCAAATGATCCAGAGAAAGCCACTAATAAACAATGAATCAAAAGGGAACATGCCTGAGGAAATTAAAGGAGACATTGAGCTAAGAGATGTTCACTTTTCCTACCCATCAAGGCCAGAGAAACCTATCCTTCAAGGACTTTCCTTGACAATTACTGCAGGAAAGACAGTGGCGCTTGTTGGTAGCAGCGGGTGTGGAAAGAGCACTGTTATTTCCTTGGTTACCAGATTTTATGACCCTCTGAGAGGGGATATTTTTATTGATCGTAACAATATCAAGGATCTTGATCTCAAGTTCCTGCGAAGAAATATAGGGACTGTTTCCCAAGAACCATCACTCTTCACAGGCACCATCAAAGATAACTTGAAAGTAGGAAAAATGGATGCAGATGACGAAGAGATACAGAAAGCAGCAGTTATGTCAAATGCACACAATTTCATATCACAGTTGCCTAATCAGTACCTAACAGAGGTAGGACAAAGGGGTGTCCAATTATCAGGGGGTCAGAAACAGAGAATTGCAATAGCAAGAGCCATTCTGAAAAATCCTCCTATCCTTCTTCTTGATGAGGCTACTAGTGCCCTTGATACGGAGTCAGAAAAGCTGGTCCAAGAAGCACTTGAGACAGCTATGCATGGAAGGACTGTCATCTTGATTGCACACAGGCTCTCCACGGTTGTAAATGCAGATGTGATTGCTGTAGTGGAGAATGGACAAGTTGTAGAAACAGGAACACACCACACTTTGTTAAATACAAGCAGATTTTATAGCACCTTATTCAGGATGCAGAACCTTGAACCAGTTCCGGAATCCGGGACTACAATTTCCACAAACAAAAGTGCCCGCCAAGTAGATATTCCTGATGAAACTAGACCACTACCAGACACACAGAGAGAGGTCCAAAGAAATCTCTCAGAGCAGTCTGCAATGAAGGAACAAAGCAATACGAGCACAAGGGAAAGGAGCATATTTTTCAGAATTTGGTTTGGTTTAAAAAAGAGGGAGCTGGTGAAGATTTCACTTGGATCGTTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGATTCTACATCATCACCATTGGAGTTGCATATTTCCATCCAGATGCAAAACGGAAAGTTGGATTTTATTCAGCCATCTTCTCTGGAATAGGGTTGCTTTCCTTATTTAGCCACACCTTCCAGCATTATTTCTTTGGAGTTATTGGAGAAAAGGCTATGGCAAATGTCAGACGTGCATTGTATTCAGGTGTACTCTGTAACGAAGTAGGCTGGTTTGACAAACCTGAGAACACTGTTGGTTCTCTAACTTCACGCATTATCAGTGATACTTCCATGGTCAAAGTCATAATTGCTGATCGCATGTCCGTGATTGTGCAATGCATTTCCTCCATACTGATAGCAACAATTGTCAGCATGAGAGTCAACTGGAGAATGGGTTTGGTAGCTTGGGCTGTTATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGGCAAGTCAGCCAAAGGATTCTCCGGTGACTACTCTGCAGCACATTCTGACCTTGTTGCACTTACATCGGAGTCTGCAACCAACATAAGGACTATTGCATCATTTTGTCATGAAGAGCAAGTACTGAAGAAAGCCAAAACATTTCTGGAAATTCCAAAGAAAAAGTACAGGAATGAGAGTATCAAGTATGGTATCATTCAAGGTTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTTTGTGGTACACAACAGTTCTAGTTGATAGACGTCAAGCCACCTTCGAAAATGGAATAAGATCATACCAAATTTTTTCTCTCACAGTTCCTTCTATCACAGAATTGTACACACTGATCCCAACTGTTGTCTCTGCTATCAATATACTAACTCCAGCATTCAAGACCCTTGACCGTAAAACTGAAATTGAACCAGATACACCAGATGATTCCCAACCTGATAGAATCCAGGGAAGTGTTGAATTTGAAAACGTACAATTCAACTACCCATCAAGACCTTCAATCACTGTTCTTGACAATTTCAGTTTACAAATTGAAGCTGGATCGAAGGTAGCTTTTGTAGGACCAAGCGGTGCAGGAAAATCTTCTGTTTTGGCCCTTCTATTAAGATTTTACAATCCAGGAATGGGAAAGGTATTAATTGATGGGAAAGACATACAGGAATATAATCTAAGGTGGTTAAGGACACAAATAGGGCTGGTACAACAAGAGCCATTGCTTTTCAACTGCTCAATTAGAGAAAATATTTGCTATGGAAATAATGCGGCTTCTGAAAGTGAAATAGTGGAGGTTGCCAGAGAAGCAAACATACATGAATTTGTAAGTAATCTACCAAACGGATATAACACTGTTGTTGGAGAGAAAGGCTGCCAGCTTTCAGGAGGACAAAAACAAAGAATAGCCATTGCCAGAACCTTACTAAAGAGGCCTGCAATATTACTCTTTGATGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAACTATAGTGAATGCTTTAAAAGCAATGAATCTGAAGGAAGGGAGTGGCTTGAGCTCAAGAATCACCCAGATCACAGTAGCTCATAGATTATCCACGGTGATAAACTCGGATACCATAGTCGTCATGGATAAGGGTAAAATTGTAGAGACGGGATCCCACTCAACCCTACTAGCATCAGATGCAGGACTCTATTCAAAGTTAATCAAGATGCAGAGCTTTGTACAAAGCTCATGGGTTGAATAG 3780 0.4188 MAPQKMVQMVNNTVEEDGGDDEPRKNVVRALPFFTLLSYADLVDWILMGLGTLGSIVHGMALPVGYLLLGKALNAFGNNIDDQDAMVAALKKVVPFVWYMAIATFPAGVLEIGCWMYASERQLSRLRLAYLQAVLSQEIGAFDTELTSGKVITGISNHMSVIQDAIGEKFGHFTSSCATFFAGIVIAAVCCWEVALLCLVVVPLILMIGAIYTKKMNTISTTKLFYQSEATSMIEQTISHIKTVYAFVGEGSAIKSFTENMDKQYMISKGEALVKGVGTGMFQTVSFCSWAIIVWVGAVVVTAGRAKGGDIIAAVMSILFGAISLTYAAPDMQTFNQAKAAGYEVFQMIQRKPLINNESKGNMPEEIKGDIELRDVHFSYPSRPEKPILQGLSLTITAGKTVALVGSSGCGKSTVISLVTRFYDPLRGDIFIDRNNIKDLDLKFLRRNIGTVSQEPSLFTGTIKDNLKVGKMDADDEEIQKAAVMSNAHNFISQLPNQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMHGRTVILIAHRLSTVVNADVIAVVENGQVVETGTHHTLLNTSRFYSTLFRMQNLEPVPESGTTISTNKSARQVDIPDETRPLPDTQREVQRNLSEQSAMKEQSNTSTRERSIFFRIWFGLKKRELVKISLGSFAAAFSGISKPFFGFYIITIGVAYFHPDAKRKVGFYSAIFSGIGLLSLFSHTFQHYFFGVIGEKAMANVRRALYSGVLCNEVGWFDKPENTVGSLTSRIISDTSMVKVIIADRMSVIVQCISSILIATIVSMRVNWRMGLVAWAVMPCHFIGGLIQGKSAKGFSGDYSAAHSDLVALTSESATNIRTIASFCHEEQVLKKAKTFLEIPKKKYRNESIKYGIIQGFSLCLWNIAHAVALWYTTVLVDRRQATFENGIRSYQIFSLTVPSITELYTLIPTVVSAINILTPAFKTLDRKTEIEPDTPDDSQPDRIQGSVEFENVQFNYPSRPSITVLDNFSLQIEAGSKVAFVGPSGAGKSSVLALLLRFYNPGMGKVLIDGKDIQEYNLRWLRTQIGLVQQEPLLFNCSIRENICYGNNAASESEIVEVAREANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKRPAILLFDEATSALDAESERTIVNALKAMNLKEGSGLSSRITQITVAHRLSTVINSDTIVVMDKGKIVETGSHSTLLASDAGLYSKLIKMQSFVQSSWVE* 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4678 1259 MobiDBLite consensus disorder prediction 642 660 - -
Lja1g4678 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Lja1g4678 1259 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 987 - -
Lja1g4678 1259 CDD ABC_MTABC3_MDL1_MDL2 1004 1250 - -
Lja1g4678 1259 Gene3D ABC transporter type 1, transmembrane domain 644 992 IPR036640 GO:0005524|GO:0016021
Lja1g4678 1259 CDD ABC_6TM_Pgp_ABCB1_D1_like 48 345 - -
Lja1g4678 1259 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524
Lja1g4678 1259 Gene3D - 994 1256 IPR027417 -
Lja1g4678 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1250 IPR027417 -
Lja1g4678 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 337 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g4678 1259 SUPERFAMILY ABC transporter transmembrane region 36 353 IPR036640 GO:0005524|GO:0016021
Lja1g4678 1259 CDD ABC_MTABC3_MDL1_MDL2 371 608 - -
Lja1g4678 1259 Gene3D - 361 609 IPR027417 -
Lja1g4678 1259 Gene3D ABC transporter type 1, transmembrane domain 35 624 IPR036640 GO:0005524|GO:0016021
Lja1g4678 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 608 IPR027417 -
Lja1g4678 1259 MobiDBLite consensus disorder prediction 615 660 - -
Lja1g4678 1259 SMART AAA_5 1031 1225 IPR003593 -
Lja1g4678 1259 SMART AAA_5 398 590 IPR003593 -
Lja1g4678 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g4678 1259 PANTHER OS08G0153200 PROTEIN 24 1251 - -
Lja1g4678 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1004 1248 IPR003439 GO:0005524
Lja1g4678 1259 Pfam ABC transporter 389 538 IPR003439 GO:0005524
Lja1g4678 1259 ProSitePatterns ABC transporters family signature. 1143 1157 IPR017871 GO:0005524
Lja1g4678 1259 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 24 1251 IPR039421 -
Lja1g4678 1259 SUPERFAMILY ABC transporter transmembrane region 677 990 IPR036640 GO:0005524|GO:0016021
Lja1g4678 1259 Pfam ABC transporter transmembrane region 687 948 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g4678 1259 Pfam ABC transporter transmembrane region 49 322 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g4678 1259 Pfam ABC transporter 1022 1171 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4678 Lja-Chr1 61658447 61675215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4678 21 1255 Calmodulin-binding Proteins AT2G36910 40.738 0.0 948
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4678 K05658 - zju:107414909 1806.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4678 1 61658447 61675215 Lja1g4678 1 61658447 61675215 ECH