Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4677 ATGGAGACTCTGAAAGCTGCGATTCCAGAACCCCTGAAGCGAGTGATCAGAGAAAGCACTGAGGATGATCTTCACAGCACATGTTCCTCTCTCCACACCTTCTTCCTTCAGTTCGAGCCATTTCACCAGATGGTGGCTGAATTGGCGGACCCGAAGTATGCTCTGTGCGGTAAGAGTAAGGACGCTGCGTTGGAATCCAAGCAGCTCGGTAATCAGTGCTTCTTGAATGCTGATTATGTGAAGGCGTTGGATTGCTACACTCAGGCATTGCGCAAGGCTCCTTTGGAGGTTGGTGGCATGGAAAATAATCTGATTGCAACATTGTATATTAATCGAGCTACTGTATTGCATAAAATGAATCTTTTAATAGAATGCTTGCGAGATTGCAATCGAGCTCTTCAGATTTGTCCAAGCTATGCAAAGGCATGGTATAGGAGAGGTAAGGCAAATGCTTCATCAGGAAATTACAAAGATGCTATCTGTGACCTAAATGTGGCTAAGAGTGTGGAATCATCAATGAGTGGGAAAAGACAAATAGAACAAGAGCTGAAAATTATTTTAGACAGATGCAAGAGCACAAGTACAATAGGGCAAGTACAACATAAGGAGAACAGCTTGAATACAGTGGGTGAGATGCCCCAAATAGAGCTACGGTGTGTCTCCATGCCTGGTAAAGGAAGAGGCATGGTGTCTTCATGTGATATTTCACCAGGTTCTTTGGTTCACGCTGAAGAACCGTATGCTATGATAATATTAAAGCAATGCCGGGAAACTCATTGCCATTATTGCTTGAATGACCTACCTGCTGATAAAGTTCCTTGTATTTCATGTTCAATACCATTGTATTGCTCCCGCCAATGCCAGATACGGGCAGGTGGGAAAACATACAGGGATTACCCAGAAGATAATGGTATTATTAAAAACTTACCCATTGATCTTGTAGAATATGCTGCTGAGATTATTCAGGAAAATGAGTATGAACAAGGGATTGAGGATATAACTGAACATAAGCATGAATGTCAAGGTGTACACTGGCCTGCCGTACTACCGGCTGAGATAGTTTTGGCTGGCCGAATACTAGCAAGATTTTTGTCAAAGAGCACATCTGAAGATACTACAAAGTTTGTGGAGAAGCTGGAGCTTTCTCATTGTTACAAACATATGCCATCTGAAAGCAAATTGGATTCTCATATATACGCCGTTGTATTATTATATTGTCTTCAATATTCTTATGGAACTATGTTTTCCATAGATGGGGTCTCTTTGTCACAGGTTGTCATAATTATTTCACAAATTAAAGTGAATTGTATGACTGTTGCACGTTTAAAATCAATAGACACTCATGGACTATCAGATCAGTCCCACGTACAATTGACTAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAGAGCTGGCAGTTTATTCAACCATTCTTGCCAACCAAATATTCATGCATATTTTCTTTCACGCACTCTCTATTTACGAACCACAAAACTTGTAGCACCTGGGCATGAGCTGGAATTGTCTTATGGTCCACAGGTTGGGCTGTGGGATTGTAAAGATCGCCTTAAATTTCTCAAAGAAGAATATGCGTTTCATTGTCAGTGTACTGGTTGTTCAGAAGTCAATCTATCTGACATTGTCCTGAATGCTTTTCATTGTGCCAATTCAAATTGTTCTGGGGCGGTGTTGGAAAGCAGAGTACTTGACTGTGAAAAGCAGAAAATCAGACACTCCCCTGCTGCTGACAAAGTTGACAAGAATGATGACATTTATGAAGTATGCCGTCATGCATTCAACCAAAACAATGCCTCCATTCATGTTCAACCTGGATACTGTTTGAAATGTGATTCTTACTCTGACCTGGAGTTTTCACGTGCCGCGGTTGATAAAGCCTTAATATGCATAAAAAGGTTGCAGGATGTGATACTGTCAAAAGAAATTGCAAATACTTATATTTCAGATGCTCTGAGATCTCTTCATTTACTGAGAGGAAAGTTGCATGCATGCAACAAGCTCGTTGCAGAGGCAGAAGACAACCTTGCCCAGGCTTTTTGTTCAGTGGGAGAATTACAATTATCTCTAGATCATTGTAAAGCATCTATCCAGATTCTGGAGAAACTATATGATCCTGGTGATATTGTTATTGCTTATGAACTTGTGAAGCTATCTTCCATCCAGCTTTCCTTGGATGATGCTACTGCTGTGGACAGCATTAGTCGAATAGGTGATATCTTCTCACGTTATTACGGTCTTCATGCAGACTTGGCCTTCCCCTATCTTCAATACCTTAGGGAGAAATTGAGAAATTTTCAGCAAAGTGAGCCATAA 2340 0.409 METLKAAIPEPLKRVIRESTEDDLHSTCSSLHTFFLQFEPFHQMVAELADPKYALCGKSKDAALESKQLGNQCFLNADYVKALDCYTQALRKAPLEVGGMENNLIATLYINRATVLHKMNLLIECLRDCNRALQICPSYAKAWYRRGKANASSGNYKDAICDLNVAKSVESSMSGKRQIEQELKIILDRCKSTSTIGQVQHKENSLNTVGEMPQIELRCVSMPGKGRGMVSSCDISPGSLVHAEEPYAMIILKQCRETHCHYCLNDLPADKVPCISCSIPLYCSRQCQIRAGGKTYRDYPEDNGIIKNLPIDLVEYAAEIIQENEYEQGIEDITEHKHECQGVHWPAVLPAEIVLAGRILARFLSKSTSEDTTKFVEKLELSHCYKHMPSESKLDSHIYAVVLLYCLQYSYGTMFSIDGVSLSQVVIIISQIKVNCMTVARLKSIDTHGLSDQSHVQLTSNVEQVRVGKAIYRAGSLFNHSCQPNIHAYFLSRTLYLRTTKLVAPGHELELSYGPQVGLWDCKDRLKFLKEEYAFHCQCTGCSEVNLSDIVLNAFHCANSNCSGAVLESRVLDCEKQKIRHSPAADKVDKNDDIYEVCRHAFNQNNASIHVQPGYCLKCDSYSDLEFSRAAVDKALICIKRLQDVILSKEIANTYISDALRSLHLLRGKLHACNKLVAEAEDNLAQAFCSVGELQLSLDHCKASIQILEKLYDPGDIVIAYELVKLSSIQLSLDDATAVDSISRIGDIFSRYYGLHADLAFPYLQYLREKLRNFQQSEP* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4677 779 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 770 - -
Lja1g4677 779 SUPERFAMILY TPR-like 63 714 IPR011990 GO:0005515
Lja1g4677 779 Gene3D Tetratricopeptide repeat domain 38 195 IPR011990 GO:0005515
Lja1g4677 779 Gene3D SET domain 421 513 IPR046341 -
Lja1g4677 779 Pfam SET domain 226 514 IPR001214 GO:0005515
Lja1g4677 779 Gene3D Tetratricopeptide repeat domain 522 778 IPR011990 GO:0005515
Lja1g4677 779 Gene3D SET domain 228 258 IPR046341 -
Lja1g4677 779 Gene3D - 259 291 - -
Lja1g4677 779 ProSiteProfiles SET domain profile. 213 514 IPR001214 GO:0005515
Lja1g4677 779 SUPERFAMILY SET domain 207 544 IPR046341 -
Lja1g4677 779 SMART tpr_5 106 139 IPR019734 GO:0005515
Lja1g4677 779 SMART tpr_5 678 711 IPR019734 GO:0005515
Lja1g4677 779 SMART tpr_5 140 173 IPR019734 GO:0005515
Lja1g4677 779 SMART tpr_5 63 96 IPR019734 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja1g4677 SET 8.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4677 K24634 - gmx:100783548 1244.18