Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4662 ATGGAATCATCATCATCATCATTATCATCACCTTCGTTGTCGTCTAATGGAAGTGGAGTTGTAAATAGTAGCAGTAGTGATAATAATAATAATAGCACTGTAAATTGGTTTGGGGTGAGTTTGCCTTTTCGTTCTCCGGTTTCTTTTGTGATTGATTACTGGAACAGTAGTAGTGATTCTGCTGAGCCGGTTGTTGTGATTCCTAATCCGCGCCCTCGGTCTCGGATTCAATCTGATTCTGGTTCTGGTGGTGGTGGTGGTGGTGCTGTGGAAGTGGCTATAAGCATTGTTGGGAGAGGAGATCAATTGGGAACTTCATCATCAGAGAATCAGGTAGGGGAACTAGGGTGTGAGGAAGAGATCATGAGTGGTGAGCGTGTGCGTGTGGCCATGTCTGCAGAGGACCGGCGTGCATTTGCTGCTGACAATGTTCCTCTGGTGGCTCTGCCTAATGCTATTAGCGGTATCCCTCGGGATTCCTCTTCTCCGTACGGGAGATTGGATGTACAGCAGATTGCAAAATGGAGTGAACAGATACTCCCTTTCGCCCTCTTGTTGTTGATTGTTTTCGTCCGCCAGCACTGGCAAGGTTTCTTTGTCACCATCTGTGTATCAGCTGTGATGTTCAAATCAAATGAAATTGTTAAGAAACAGACAGCTCTAAAGGGAGATCGGAAAGTCTCTGTACTTCTCAGCATCGCTTTTGCCTTCATGTTTTATGTGATGTGCATTTATTGGTGGCATTGTAATGATGATCTTCTGTCCCCACTGGCAATGGTTCCGCCAAAAGCAACACCACCATTTTGGCACACAATATTCATTGTTTTGGTTAATGATACATTGGTGAGGCAAGCAACAATGGCTTTCAAGTGTTTGTTGCTTATCTACTACAAAGATAGCAGAGGCCATAATTTCCGTCGGCAGGCTCAAATGTTAACTCTGGTTGAGTACACACTGCTGTTGTATCGGGCTTTGTTGCCAACGCCAGTTTGGTACCGATTTTTCTTGAACAAGGAATATGGAAGTCTCTTTTCATCACTGACCACAGGATTGTATCTAACTTTCAAACTAACATCTGTAGTTGAGAAGGTCCGGTGTTTCTTTAGTGCTTTAAAAGCATTATCAAAACATGAAGTTCATTATGGGGCTTATGCAACAATGGAACAGGTAAATGCTGCTGGTAACCTTTGCGCTATATGCCAGGAGAAGATGCATTCTCCTATCTTGTTGTGCTGTAAACACATGTTCTGCGAAGAGTGTGTATCCGAATGGTTTGAGAGAGAACGGACTTGCCCATTATGCAGGGCATCGGTAAAACCCGCTGATCTGCAGACCTTTGGAGACGGATCAACAAGTCTGTTTTTTCAGTTGTTTTAA 1377 0.4386 MESSSSSLSSPSLSSNGSGVVNSSSSDNNNNSTVNWFGVSLPFRSPVSFVIDYWNSSSDSAEPVVVIPNPRPRSRIQSDSGSGGGGGGAVEVAISIVGRGDQLGTSSSENQVGELGCEEEIMSGERVRVAMSAEDRRAFAADNVPLVALPNAISGIPRDSSSPYGRLDVQQIAKWSEQILPFALLLLIVFVRQHWQGFFVTICVSAVMFKSNEIVKKQTALKGDRKVSVLLSIAFAFMFYVMCIYWWHCNDDLLSPLAMVPPKATPPFWHTIFIVLVNDTLVRQATMAFKCLLLIYYKDSRGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVRCFFSALKALSKHEVHYGAYATMEQVNAAGNLCAICQEKMHSPILLCCKHMFCEECVSEWFERERTCPLCRASVKPADLQTFGDGSTSLFFQLF* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4662 458 CDD RING-HC_RNFT1_like 396 435 - -
Lja1g4662 458 ProSiteProfiles Zinc finger RING-type profile. 397 435 IPR001841 -
Lja1g4662 458 Pfam Zinc finger, C3HC4 type (RING finger) 395 439 - -
Lja1g4662 458 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 458 IPR044235 GO:0061630|GO:1904294
Lja1g4662 458 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 458 - -
Lja1g4662 458 MobiDBLite consensus disorder prediction 1 28 - -
Lja1g4662 458 ProSitePatterns Zinc finger RING-type signature. 412 421 IPR017907 -
Lja1g4662 458 SUPERFAMILY RING/U-box 390 441 - -
Lja1g4662 458 SMART ring_2 397 434 IPR001841 -
Lja1g4662 458 MobiDBLite consensus disorder prediction 68 87 - -
Lja1g4662 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 452 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4662 Lja-Chr1 61340676 61348596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4662 68 458 C3H Transcription Factor Family AT5G01960 63.520 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4662 - K22379 gmx:100784614 618.616