Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4649 ATGAAGTTTGAGTTCTCTATTGCTGCTCTTGTTCTATTAACCTCCACACTGTCTCTCTTTAGCTTGATTGAAGCATCTGACTTGAACTCAGATAAACAAGCTCTCTTGGAGTTCGCTTCTTCAGTCCCACATGCTCCAAGGCTCAACTGGAATAATGACTCAGCTTCAATTTGCACCTCATGGGTTGGTGTGACTTGTAACTCAAACGGAACTCGTGTCACCGGAATCCATCTTCCGGGAATCGGATTAACTGGGTCCATTCCGGAGAACACCATTGGAAAACTAGATGCTCTTAAGGTCCTTAGCCTTCATTCCAATGGCCTTAAAGGAACATTTCCTTCTAACATTCTCTCTATTCCTTCACTCCAATTTGCACACTTGCAGCACAACAATTTCTCAGGTCCAATTCCTTCCATTGTCTCCCCTAAACTCATTACATTGGACATTTCCTTTAACTCTTTTTCTGGTAGCATTCCACCTGCATTTCAGAACCTGAGAAGACTCACCTGGTTGTATCTCCAACACAATTTCATATCTGGAGCTATCCCTGACTTTGACCTTCCTAGTCTCAAACACTTGAATTTGAGTTATAATAACTTGAATGGCTCAATTCCAAACTCCATCAAGACATTCCCAAATACTTCTTTTCTTGGGAACTCTCTCTTATGTGGGCCACCTCTCAATAGTTGCTCTTCAATCTCTCCCTCTCCATCTCCTTCTCCTCCTGCAACCACCCAAAACCAAAAAGCAACCACACATAAGAAAAGCTTTGGCCTAGCTATTATACTTGCTCTGGTCATTGGAGGCATTGCCTTCCTTTCTCTACTATTTTTGGTGATCTCTGTGTGCTGTCTGAAGAGGAAGAACAGTAAAACCAGTGGTATACTGAAAGGAAAGGCTTCTTGTGCTGGAAAGCCTGAGATGTCTAAGAGTTTTGGAAGCGGCGTGCAAGCTGCTGAGAAGAACAAGTTATTTTTCTTTGAAGGCTCCTCTCATAGCTTTGACCTTGAGGATTTGCTAAAGGCCTCAGCTGAAGTTCTTGGGAAAGGGAGCTACGGAACAGCTTACAAGGCTGTTCTGGAGGAAGGAACAACAGTGGTGGTTAAAAGGTTGAAGGAAGTTGTGGTTGGAAAGAAGGAGTTTGAGCAACAGATGGAAATTGTGGGGAGAATTGGACAACACCCTAATGTCATGCCTCTTAGAGCTTATTACTATTCCAAAGATGAGAAACTCCTAGTCTACAACTACATGCAAGGAGGCAGCTTGTTTTTCTTGTTGCATGGAAACAGGGGTGCAGGAAGAACTCCACTAGATTGGGATTCAAGAGTGAAGATTGCAGTGGGAGCTGCCAAGGGAATTGCTTTCATTCACTCTGAAGGGGGACCAAAATTCGCACATGGCAACATCAAGTCCACCAATGTGCTCATAACAGAAGAACTTGAGAGCTCCATATCTGATGCTGGATTGGCTCCTGTCATGAATGCCCCATCAACTATGTCTAGATCCAATGGCTATAGAGCCACAGAAGTCACTGATTCAAGGAAGATCACACAAAAATCTGATGTTTACAGCTTTGGTGTGCTGCTTCTTGAAATGCTGACAGGGAAAACCCCACTGAGATATCCTGGCTATGAAGATGTGGTTGATCTTCCAAGGTGGGTGAGGTCTGTTGTGAGGGAGGAATGGACAGCTGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAGTATGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCACTTGCTTGTGTAGCTAAGACACCAGATATGAGGCCTAGAATGGAGGATGTTGTTAGAATGGTTGAGCAAATTAAGCACCCTGAGTTGAAGAACAGGGCATCCTCTGAATCTGGTTCTAATGATCAGACACCATGA 1899 0.4397 MKFEFSIAALVLLTSTLSLFSLIEASDLNSDKQALLEFASSVPHAPRLNWNNDSASICTSWVGVTCNSNGTRVTGIHLPGIGLTGSIPENTIGKLDALKVLSLHSNGLKGTFPSNILSIPSLQFAHLQHNNFSGPIPSIVSPKLITLDISFNSFSGSIPPAFQNLRRLTWLYLQHNFISGAIPDFDLPSLKHLNLSYNNLNGSIPNSIKTFPNTSFLGNSLLCGPPLNSCSSISPSPSPSPPATTQNQKATTHKKSFGLAIILALVIGGIAFLSLLFLVISVCCLKRKNSKTSGILKGKASCAGKPEMSKSFGSGVQAAEKNKLFFFEGSSHSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQQMEIVGRIGQHPNVMPLRAYYYSKDEKLLVYNYMQGGSLFFLLHGNRGAGRTPLDWDSRVKIAVGAAKGIAFIHSEGGPKFAHGNIKSTNVLITEELESSISDAGLAPVMNAPSTMSRSNGYRATEVTDSRKITQKSDVYSFGVLLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKTPDMRPRMEDVVRMVEQIKHPELKNRASSESGSNDQTP* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4649 632 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Lja1g4649 632 SUPERFAMILY Protein kinase-like (PK-like) 345 612 IPR011009 -
Lja1g4649 632 CDD STKc_IRAK 347 612 - -
Lja1g4649 632 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515
Lja1g4649 632 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515
Lja1g4649 632 Gene3D Ribonuclease Inhibitor 29 141 IPR032675 -
Lja1g4649 632 Pfam Protein kinase domain 345 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4649 632 PANTHER OS05G0588300 PROTEIN 3 630 - -
Lja1g4649 632 Gene3D Transferase(Phosphotransferase) domain 1 417 630 - -
Lja1g4649 632 Gene3D Ribonuclease Inhibitor 142 232 IPR032675 -
Lja1g4649 632 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
Lja1g4649 632 PANTHER RECEPTOR-LIKE KINASE 3 630 - -
Lja1g4649 632 ProSitePatterns Protein kinases ATP-binding region signature. 347 378 IPR017441 GO:0005524
Lja1g4649 632 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4649 632 Gene3D Phosphorylase Kinase; domain 1 308 416 - -
Lja1g4649 632 SUPERFAMILY L domain-like 29 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4649 Lja-Chr1 61125822 61130570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4649 7 613 Receptor kinase-like Gene Family AT5G58300 58.920 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja1g4649 Pkinase 1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4649 - - aprc:113868460 1024.62