Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4643 ATGGAGAAGGAATTGGTGGAATTGTATGAGGCCGCGAAGAAGGCGGCGGATGCGTCCAGTTCTTCCGATAGCGAACATGAAGAAACCCGATGCATTGATGCGCTTGAACAGCTCAAGAAATTTCCCGTCAATTACAAGATTCTTGTTAACACCCAGGTGGGCAAACATCTTAAAGTTCTTACTAAGCATCCCAAGCCGAAAATTAAGGCTTTTGCTGTTGAACTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAGAACGGGGGCTCTGATAATAAGGTTGAGTCAGCGAATGGGGACAGAGCTAAAGCTGGGAAAATGCAGAAGAGTCCCTCGGTGAAGGTTGAGAAAGGTGAAACTGTCAAAGTTGAGAAAATTGATAGGAATGGTACACCAAGGTCAAGCTCAGAAAATACAAACAAGGCACGAAATGTGGATGTCAAAATTGAGAAAACTGAACGTGCTGCTAGTGTCAAGGTGGAAAAGATAGCCAAGGAAGAAAAGCCAGTTTCTGTGGTGAAGAAAACACCATCCAGCTCTGCCGCTCCTCCGAAGCTAACATCTATGATTAAATCTAATGACTCTGCGCGGGACAAAATAAGGGAGCTTCTCAGAGAGGCTTTATCAAAGGTCTCAGAAGAGGCAGATGGAGACATGATGGATGAAGTTAACGCGTGTGACCCTATTCGTGTTGCTGTAAAAGTGGAGTCTGTGTTATTTGAAAACTGGGGTGCTTCAAATGGGGCCCAAAAGGTCAAGTACAGGTCCTTAATGTTTAACCTGAAGGACGCGAAGAACCCAGATTTTCGAAGAAAAGTTCTACTCGGTGTTATTGAGCCGGAGCGGCTGGTCAACATGAGCACGGCAGAAATGGCCAGTGAACAGAGGAAGCAGGAGATTGAGAAAATCCAAGAGAAAGCTTTGTTTGAATGTGAGCGTGGAGCTCCACCAAAAGCTACAACTGATCAATTCAAGTGTGGTCGGTGCGGGCAAAGGAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTACTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1110 0.4468 MEKELVELYEAAKKAADASSSSDSEHEETRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPKPKIKAFAVELIEIWKGIIIKETSKNKNGGSDNKVESANGDRAKAGKMQKSPSVKVEKGETVKVEKIDRNGTPRSSSENTNKARNVDVKIEKTERAASVKVEKIAKEEKPVSVVKKTPSSSAAPPKLTSMIKSNDSARDKIRELLREALSKVSEEADGDMMDEVNACDPIRVAVKVESVLFENWGASNGAQKVKYRSLMFNLKDAKNPDFRRKVLLGVIEPERLVNMSTAEMASEQRKQEIEKIQEKALFECERGAPPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCTVCNNRWKFC* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4643 369 Gene3D - 298 369 - -
Lja1g4643 369 Pfam Transcription factor S-II (TFIIS) 329 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lja1g4643 369 CDD Zn-ribbon_TFIIS 322 368 - -
Lja1g4643 369 Coils Coil 191 211 - -
Lja1g4643 369 SUPERFAMILY Elongation factor TFIIS domain 2 184 299 IPR036575 GO:0006351
Lja1g4643 369 SUPERFAMILY Zinc beta-ribbon 308 367 - -
Lja1g4643 369 TIGRFAM TFSII: transcription elongation factor S-II 13 369 IPR006289 GO:0003676|GO:0005634|GO:0006368
Lja1g4643 369 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 98 IPR035441 -
Lja1g4643 369 Gene3D - 179 297 IPR036575 GO:0006351
Lja1g4643 369 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 369 - -
Lja1g4643 369 SMART TFS2_5 8 85 IPR003617 GO:0005634
Lja1g4643 369 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 98 IPR035441 -
Lja1g4643 369 Coils Coil 291 311 - -
Lja1g4643 369 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Lja1g4643 369 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 369 - -
Lja1g4643 369 ProSiteProfiles Zinc finger TFIIS-type profile. 327 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lja1g4643 369 ProSiteProfiles TFIIS central domain profile. 201 324 IPR003618 GO:0006351
Lja1g4643 369 SMART Cys4_2 329 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lja1g4643 369 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Lja1g4643 369 CDD TFIIS_I 27 83 - -
Lja1g4643 369 SMART mid_6 199 307 IPR003618 GO:0006351
Lja1g4643 369 MobiDBLite consensus disorder prediction 89 122 - -
Lja1g4643 369 PIRSF TFIIS 2 369 IPR035100 -
Lja1g4643 369 Pfam Transcription factor S-II (TFIIS), central domain 198 315 IPR003618 GO:0006351
Lja1g4643 369 ProSitePatterns Zinc finger TFIIS-type signature. 331 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lja1g4643 TFIIS_M 3.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4643 K03145 - gmx:100811982 575.474