Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4639 ATGAACCTCACTGGAAGATTTTTTCAGCAAATCAGTACTATAGCTGGTAATCAAGTGCCTAGCTATTTTGTGTGGGAAGTCCTTTTTACTATGTCCATCATGGGATTGGGACTCTTGCTTTTTGCAATTCTCATTGGAAACATACAGAATTTTCTACAGGCTCTTGGGCGGAGGAAGCTAGAAATGCAACTTAGAGGTCGTGATGTTGAGCAATGGATGAGCCATCGGCGCTTACCAGTAGACCTGAGAAGGAGAGTAAGACAGGCTGAACGGTATAATTGGGCTGCAACAAGGTGGGTGAATGAAGAAATGGTTATGGAGAATCTGCCAGAAGATCTGCAGAGAGACATTAGACGCCATCTCTTCAGATTTGTTAAGGAAGAAAATCATTTTGCCAGAGTATGGAACTAG 411 0.4282 MNLTGRFFQQISTIAGNQVPSYFVWEVLFTMSIMGLGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPVDLRRRVRQAERYNWAATRWVNEEMVMENLPEDLQRDIRRHLFRFVKEENHFARVWN* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4639 136 Gene3D Helix hairpin bin 56 121 - -
Lja1g4639 136 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 131 - -
Lja1g4639 136 SUPERFAMILY Voltage-gated potassium channels 8 53 - -
Lja1g4639 136 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 8 131 - -
Lja1g4639 136 SUPERFAMILY cAMP-binding domain-like 58 128 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4639 Lja-Chr1 61015832 61017891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4639 8 132 Ion Channels AT3G17700 76.000 9.98e-53 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4639 K05391 - lja:Lj1g3v1135200.2 229.95