Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4637 ATGGCTTCTACAGGTTCTTCATCTTCAAATTGGGTCATGGAAAGTGGTGATATTCCTCATGTTTTGGCTGTTGATGACAACCTTATTGATCGCAAACTTGTTGAAAAACTGCTCAGGAATTCTTCTTGCAAAGTTACCACTGCAGAAAATGGGCCAAGGGCATTGGAGTTCTTGGGCTTAACAAGTGGTGAACAGAACACCTTGAATGGGAGATCCAAAGTAAATTTGATTATCACAGACTATTGCATGCCAGGGATGACAGGCTATGAGCTACTCAAGAAAATCAAGGAATCATCTGCAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAATATTCCAACACGGATTAACAAGTGCCTGGAAGAAGGAGCTCAAATGTTCATCCTAAAGCCCCTCAAACAATCTGATATAAAGAAATTGATGAAGCTAGGAATGTGA 444 0.4077 MASTGSSSSNWVMESGDIPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNGRSKVNLIITDYCMPGMTGYELLKKIKESSAMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDIKKLMKLGM* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4637 147 ProSiteProfiles Response regulatory domain profile. 20 147 IPR001789 GO:0000160
Lja1g4637 147 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 8 142 - -
Lja1g4637 147 Gene3D - 17 146 - -
Lja1g4637 147 Pfam Response regulator receiver domain 21 142 IPR001789 GO:0000160
Lja1g4637 147 SUPERFAMILY CheY-like 19 143 IPR011006 -
Lja1g4637 147 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 142 IPR045279 GO:0009736
Lja1g4637 147 CDD REC_typeA_ARR 21 142 - -
Lja1g4637 147 SMART REC_2 19 143 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4637 Lja-Chr1 60908561 60909968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4637 5 142 Response Regulator Gene Family AT3G56380 70.000 1.43e-62 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g4637 Response_reg 8e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4637 K14492 - gmx:100499827 259.61