Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4635 ATGCGAGCTTTATTCAACATGAGAGCTCTTCTTTTGTGCTTGTTGCCGCTGATTCTGACGGCGGCGGCGGTGGCGGCGGTAGCTGTGAGCCCGTCACTGAACGACGACGTATTGGGGCTGATTGTGTTCAAAGCTGACATACGAGATCCGAAGGGGAAGCTGGTGTCATGGAACGAGGATGATGAAAGTGCTTGTGGCGGTGGTTGGGTTGGGGTGAAATGTAACCCTAGATCCAACAGGGTGGTGGAGCTGAACCTCGATGGGTTCTCTCTCTCTGGGAGAATTGGGAGAGGTTTGCAGCGCTTGCAGTTTCTGCGGAAGCTTTCTCTGAGGAACAACAATCTCACAGGGAGCATAACCCCCAGCATTGCTATTGTTGATAATCTTCGGGTGCTTGATTTGAGCAACAACAATCTTTCAGGGGAGGTGCCTGATGAGATTTTCCGACAATGTGGGTCTCTGAAGACTGTTTCCTTGGCGAGGAACAAGTTTTCTGGGAACATTCCTTCCACTTTGGTCTCTTGTTCTTCTCTTGCTTCCATTGACCTGTCTCTTAACCAGTTTTCAGGTTCTGTTCCCTCTGGGGTTTGGGCGCTGAGTGGGCTCAGGGCTTTGGATTTGTCTGGTAACATGTTGGAGGGTGAGATTCCAAAAGGGGTTGAGGCGATGAAGAATTTGAGGAGCATAAGCTTGGCGAGGAATCAGTTATCTGGGAAGATTCCAGATGGGTTTGGAAGTTGTTTGCTCTTGAGGTCTGTTGATTTCAGTGAGAACGCTTTCTCCGGTGGCATTCCTGGCGATTTGAAGGGACTAGTGTTGTGTGGTTACTTTAGTTTGAGTGGTAATGCTTTCTCAGGAGAGGTTCCTGAGTGGATTGGAGAGATGAAGGGTCTTGAGACATTGGACCTTTCCCGGAATAGATTTTCTGGTCAAGTGCCAAGCTCTGTAGGAAATCTTCAGTCACTGAAGGTTTTGAATTTTTCTTCCAATGGTTTCACTGGTAATCTGCCAGAGTCTATGGTGAATTGCACAAGCCTTTTGGCCTTGGATGTCAGTCAGAATTCAATGTCTGGAGGCCTTCCATCGTGGATTTTCAAGTCGGATGTGGAGAAGGTTTTGGTATCGGAAAACAGACCCAGTGGTAGCCTGGAAACCCCTTTGTTTTCCCTGGCTGAAGTTGCGGTTCAGAGTCTTCAGGTTTTGGATTTATCTCACAACGCATTTTCTGGTGAAATCACGTCTGCTATTGCAGGTTTAAGCAGCTTGCAACTTTTGAATTTATCAAGGAACTCTCTGAGAGGCCCTATACCAGCTGCAATTGGTGAACTGAAAACTTGTTCTAGTCTTGATTTGAGTTATAATAAGCTCAACGGAAGTATACCTGTGGAAATAGGAGGAGCTATGTCCTTGAAAGAGTTGATATTGGAAAAGAACTTCCTAATTGGGAAGATTCCCACCTCGATTGAGAACTGCTCTTCGTTAACAACTTTGATTCTGTCGCAGAACAGGCTCAGCGGGTTGATACCAGCTGCGGTTGCAAAACTTACCAATCTACAAATCGTGGACTTATCATTTAACGACCTTACTGGAAACCTTCCGAAGCAATTGGCCAACCTTCCCAACCTTCTTTCCTTCAATATATCTCACAACAACCTTCAGGGTGAATTGCCGGCTGGTGGTTTTTTCAACACCATTTTACCGTCTTCTGTTTCTGGCAATCCATCACTTTGTGGCTCTGCAGTGAACAAATCATGCCCTACTGTCCTCCCAAAGCCTATTGTTCTGAATCCCAACACTACTGACTCTGGCTCTGTACTGCCTGCAAATTTTGGTCACAAGAGAAATATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTTTCATTGTAATTGGTGTCATCGGCATAACTGTTCTTAACCTCCGTGTTCGGTCCTCCGCTTCTCGAACTCTTGCTGCCCATACATTTTCTGCAGGGGATGAATTCAGCCGTTCACCAACAACGGATGCCAACTCTGGCAAGCTTGTCATGTTTTCAGGTGAGCCTGATTTCAGCTCTGGGGCACATGCTTTACTTAACAAGAATTGTGAGCTTGGGCGCGGAGGGTTTGGGGCCGTGTACCAAACAGTTCTCGGAGATGGGCATTCAGTTGCTATAAAGAAACTCACCGTATCGAGCCTTGTCAAGTCTCAAGATGATTTTGAAAGGGAAGTGAAGAAATTAGGAAAAGTCAGACACCAAAATCTTGTGGAACTTGAAGGTTATTATTGGACTTCATCACTGCAGCTCCTCATATACGAGTATGTCTCTGGTGGTAGTCTGCATAAGCATCTCCATGAAGGTTCAGGCGGAAACTTCCTCTCGTGGAATGAGAGGTTCAACGTGATTCTCGGGACAGCAAAGGGCTTAGCTCACTTGCACCACTCCAACATCATTCACTACAACATCAAGTCAACCAATGTGCTAATTGATAGCTACGGTGAACCAAAAGTTGGCGATTATGGCCTAGCAAGGCTGCTGCCTATGCTCGATCGTTACGTCTTGAGCAGCAAAATTCAGAGTGCGCTTGGCTACATGGCACCAGAGTTTGCCTGCAAAACAGTGAAGATCACTGAGAAATGCGACGTTTATGGGTTTGGGGTATTGGTTCTGGAGATTGTTACAGGGAAGAGGCCTGTGGAGTACATGGAGGACGATGTGGTGGTGCTGTGTGACATGGTGAGAGGCGCATTGGAAGAAGGGAGAGTGGATGAATGTATTGATGAGAAGCTCCAAGGGAAGTTCCCGGCGGAGGAAGCGATTCCGGTAATGAAGCTCGGGTTAATATGTACATCTCAAGTGCCATCTAACAGACCTGAAATGGGAGAGGTTGTTAACATATTGGAACTGATAAGATGCCCCTCAGAAGGAACTGAGGAGTTGGGATGA 2934 0.4676 MRALFNMRALLLCLLPLILTAAAVAAVAVSPSLNDDVLGLIVFKADIRDPKGKLVSWNEDDESACGGGWVGVKCNPRSNRVVELNLDGFSLSGRIGRGLQRLQFLRKLSLRNNNLTGSITPSIAIVDNLRVLDLSNNNLSGEVPDEIFRQCGSLKTVSLARNKFSGNIPSTLVSCSSLASIDLSLNQFSGSVPSGVWALSGLRALDLSGNMLEGEIPKGVEAMKNLRSISLARNQLSGKIPDGFGSCLLLRSVDFSENAFSGGIPGDLKGLVLCGYFSLSGNAFSGEVPEWIGEMKGLETLDLSRNRFSGQVPSSVGNLQSLKVLNFSSNGFTGNLPESMVNCTSLLALDVSQNSMSGGLPSWIFKSDVEKVLVSENRPSGSLETPLFSLAEVAVQSLQVLDLSHNAFSGEITSAIAGLSSLQLLNLSRNSLRGPIPAAIGELKTCSSLDLSYNKLNGSIPVEIGGAMSLKELILEKNFLIGKIPTSIENCSSLTTLILSQNRLSGLIPAAVAKLTNLQIVDLSFNDLTGNLPKQLANLPNLLSFNISHNNLQGELPAGGFFNTILPSSVSGNPSLCGSAVNKSCPTVLPKPIVLNPNTTDSGSVLPANFGHKRNILSISALIAIGAAAFIVIGVIGITVLNLRVRSSASRTLAAHTFSAGDEFSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKNCELGRGGFGAVYQTVLGDGHSVAIKKLTVSSLVKSQDDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEYVSGGSLHKHLHEGSGGNFLSWNERFNVILGTAKGLAHLHHSNIIHYNIKSTNVLIDSYGEPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVDECIDEKLQGKFPAEEAIPVMKLGLICTSQVPSNRPEMGEVVNILELIRCPSEGTEELG* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4635 977 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 10 974 - -
Lja1g4635 977 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Lja1g4635 977 SUPERFAMILY L domain-like 265 597 - -
Lja1g4635 977 SMART LRR_typ_2 126 150 IPR003591 -
Lja1g4635 977 SMART LRR_typ_2 295 319 IPR003591 -
Lja1g4635 977 SMART LRR_typ_2 515 538 IPR003591 -
Lja1g4635 977 SMART LRR_typ_2 199 222 IPR003591 -
Lja1g4635 977 SMART LRR_typ_2 491 514 IPR003591 -
Lja1g4635 977 SMART LRR_typ_2 419 443 IPR003591 -
Lja1g4635 977 SMART LRR_typ_2 223 247 IPR003591 -
Lja1g4635 977 SMART LRR_typ_2 539 563 IPR003591 -
Lja1g4635 977 SMART LRR_typ_2 395 418 IPR003591 -
Lja1g4635 977 PRINTS Leucine-rich repeat signature 419 432 - -
Lja1g4635 977 PRINTS Leucine-rich repeat signature 129 142 - -
Lja1g4635 977 SUPERFAMILY Protein kinase-like (PK-like) 698 967 IPR011009 -
Lja1g4635 977 Pfam Leucine Rich Repeat 128 145 IPR001611 GO:0005515
Lja1g4635 977 Gene3D Phosphorylase Kinase; domain 1 687 770 - -
Lja1g4635 977 Pfam Leucine rich repeat N-terminal domain 34 75 IPR013210 -
Lja1g4635 977 CDD STKc_IRAK 700 966 - -
Lja1g4635 977 Pfam Leucine rich repeat 397 456 IPR001611 GO:0005515
Lja1g4635 977 Pfam Leucine rich repeat 297 355 IPR001611 GO:0005515
Lja1g4635 977 Pfam Leucine rich repeat 469 528 IPR001611 GO:0005515
Lja1g4635 977 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Lja1g4635 977 Gene3D Transferase(Phosphotransferase) domain 1 771 974 - -
Lja1g4635 977 ProSiteProfiles Protein kinase domain profile. 694 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4635 977 SUPERFAMILY L domain-like 61 378 - -
Lja1g4635 977 Gene3D Ribonuclease Inhibitor 314 589 IPR032675 -
Lja1g4635 977 ProSiteProfiles Leucine-rich repeat profile. 128 150 IPR001611 GO:0005515
Lja1g4635 977 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 974 - -
Lja1g4635 977 Pfam Protein tyrosine and serine/threonine kinase 696 962 IPR001245 GO:0004672|GO:0006468
Lja1g4635 977 Gene3D Ribonuclease Inhibitor 34 313 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4635 Lja-Chr1 60837240 60841658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4635 17 977 Receptor kinase-like Gene Family AT3G56370 68.074 0.0 1284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Lja1g4635 PK_Tyr_Ser-Thr 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4635 - - gmx:100791629 1595.1