Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4633 ATGTCCTCCGACGACATCACCCTCGTCTCTGGCCAGAGAATTGAAAACGGTCTCACCTCACCCCTCGTCTTCCAAGACGACTTCAACCCACAGCGCAACCCGGCTCCGAAAACCCGCGAACTCGGCGGCGGGTTCATCGACGACAAGATCTTCACCATCGACCGCGACCGCGACCGCTTTTTCACCACCCCGGGCGCCGAATTCCGCCGCAACGTTTACGCCGACCGCCCCGATGTTCGGAATTGGAGAGGGAACGGAACTCCCAGCAGCGATGAAACCGACGGCGACGAAGACGATGATGAAGATGACGACGACGACGACGATGATGCAGAAGTAGTAAGACTCAAGGGCAATTCCAATGTAATCAATGACGATGGGGTTGCAAATGGGAAAACTCAGCATCATTCCCCTTATGTTTCTGGTAGAGATTTGTTGGGGAAGGATGGTGAAATTGGGCAGATGGGTGGTGGTGGTGCTGATGGAGATCACCGGCGGCGGGAAAGATTAGGGAAGTCCCAGGGTTCTGTGAGCGTTGCTGAAACTGACTGTGAGGAGTACTATTCTCAGTTTCTTCATGGCACGGAAGGGTCAGCTTCTGTGCAGAAGGCTATGGTGGATGATAATGGTTGTGGGTTTAGTGGAAGAAAGGATGTTATGTTTTCAACTGAGTCAGGGGAGTCTTTGAGGGCCATTCTTTCAGATCCTGTTACAGGAGCTCTTATGGAAGATGCAATGATATTACCATGTGGACATTCATTTGGTGGAGGGGGGATACAACATGTTACTAGAATGAAAGCTTGCTGTACTTGTTCTCAACCCGTATCGGAGGAATCAATATCTCCAAACCTATCACTTCAAGCTGCTGTGCAGGCATACCGTCGGGAAGAGGAGTCGCAATTTTACCGGTCATCCAAAAGAAGAAGGGAAAGACTTGATCAGGGTGGTTTTGGAGATTCACCTGTTATGGAATCATCAAGGAGCAGAGGTGTTCAGTTTCCATTTGCTGTGATGGACCGGGTTGTCATAAAGGGGAACAAAAGGACACCACCACGCTTTGTAGGGCGTGAAGCTATTGTAACAACACAATGCCTTAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAATTACAGTATCGCTCCCTTGCTAAGGTTTTGGATGATCCTTCAAAGCCTGCCTCCAGCAAGATGGTACCTAATTGGGTTTAG 1221 0.4963 MSSDDITLVSGQRIENGLTSPLVFQDDFNPQRNPAPKTRELGGGFIDDKIFTIDRDRDRFFTTPGAEFRRNVYADRPDVRNWRGNGTPSSDETDGDEDDDEDDDDDDDDAEVVRLKGNSNVINDDGVANGKTQHHSPYVSGRDLLGKDGEIGQMGGGGADGDHRRRERLGKSQGSVSVAETDCEEYYSQFLHGTEGSASVQKAMVDDNGCGFSGRKDVMFSTESGESLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTCSQPVSEESISPNLSLQAAVQAYRREEESQFYRSSKRRRERLDQGGFGDSPVMESSRSRGVQFPFAVMDRVVIKGNKRTPPRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPSKPASSKMVPNWV* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4633 406 MobiDBLite consensus disorder prediction 91 110 - -
Lja1g4633 406 SUPERFAMILY RING/U-box 228 298 - -
Lja1g4633 406 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 43 405 - -
Lja1g4633 406 MobiDBLite consensus disorder prediction 122 136 - -
Lja1g4633 406 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 43 405 - -
Lja1g4633 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 297 IPR013083 -
Lja1g4633 406 MobiDBLite consensus disorder prediction 78 178 - -
Lja1g4633 406 MobiDBLite consensus disorder prediction 21 43 - -
Lja1g4633 406 ProSiteProfiles U-box domain profile. 227 299 IPR003613 GO:0004842|GO:0016567
Lja1g4633 406 MobiDBLite consensus disorder prediction 301 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4633 Lja-Chr1 60823290 60827187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4633 172 406 Plant U-box Gene Family AT5G05230 61.570 7.65e-95 287