Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4630 ATGGATCTTCATCACCATCTACACCGCCGCCTGTTGGTTCACCGTGTAAATTCAACTGATCCAGGGTCGAAGGAATCTCTCACCGGTGGCTCAAATTTTGACACCAACATGCTGTTTATCTTGGCAGCTTTGCTTTGTGCACTGATATTGGCTCTGGGACTCAACTCCATTGTGCGCTGTGCTTGTTTGCTTTTGAGATGTAGCCACAGGCTTGCTTTCGAGACGCCGGAGGAGGCCGCAGCTCGTTTAGCCTCGAAAGGGTTAAAGAAGAGTGCATTGAATCAGATCCCTGTGGTTGTTTATGGTTCAGGTAGTGCTAGTACTAGTATTGCAGCCACAGATTGTGCAATTTGCCTTGGGGAATTTGTGGATGGAGAGAAAGTTAGAGTTCTGCCAAAATGTAACCATGGATTCCATGTGAAGTGCATAGATAAATGGCTGCTCTCACACTCTTCTTGTCCTAACTGCAGACAGTCATTGCTTGACCCTCCATCAATGTCTGAAGCTGCAACTGTCGCAGTAGCTGTAGTTGCAGATGCTGGAACCACGCGCCATGTAGAGAATTCCTTGGGAGGACATGAACCTGGGACTTTAGCTATAGCTGTGGACGAGGTTGGCTAA 621 0.4783 MDLHHHLHRRLLVHRVNSTDPGSKESLTGGSNFDTNMLFILAALLCALILALGLNSIVRCACLLLRCSHRLAFETPEEAAARLASKGLKKSALNQIPVVVYGSGSASTSIAATDCAICLGEFVDGEKVRVLPKCNHGFHVKCIDKWLLSHSSCPNCRQSLLDPPSMSEAATVAVAVVADAGTTRHVENSLGGHEPGTLAIAVDEVG* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4630 206 SMART ring_2 115 156 IPR001841 -
Lja1g4630 206 Pfam Ring finger domain 114 157 IPR001841 -
Lja1g4630 206 CDD RING-H2_PA-TM-RING 114 157 - -
Lja1g4630 206 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 22 174 - -
Lja1g4630 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 162 IPR013083 -
Lja1g4630 206 SMART FANCL_C_2 111 162 - -
Lja1g4630 206 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Lja1g4630 206 SUPERFAMILY RING/U-box 100 164 - -
Lja1g4630 206 PANTHER RING-H2 FINGER PROTEIN ATL74 22 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4630 Lja-Chr1 60770134 60770754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4630 10 161 C3H Transcription Factor Family AT3G10910 55.828 1.51e-49 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4630 - K19040 gmx:100787273 247.284