Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4629 ATGGCTCTTCATCATGGTCTACACCGTCGCCTGTTGCTTCACCATCCAAACTCAACTGGTCCAGGTAGCAGGAATTGGTCCAGGGAATCTCTCACTGGTAGCTCAGATTTTGACACCATCATGGTGTTTATCTTGGCAGGTTTGGTTTTTGCCTTTGGACTTATATTTTCTCTGGTACTCCGCTCCATTGTGCGTTGCGCTCAAAGATGTAGCCGCAGTTTTGCTTTTGAAACCCCAGATGAGGCAGTACCTCGTTTAGGCTCAAAAGAATTAAAAAAGAGTGCATTTCATCAGATCCCTAAAGTTGTTTATGGTTCAGGTAGTACAAGTAGTGCAGCCACAGACTGTTCAATTTGCCTTGGGGAATTTATGGATGGAGTGAAAGTTAGAGTGCTACCAAAATGTAACCATGTGTTCCATGTAAAGTGCATAGATGTATGGCTGCTCTCACACTCTTCTTGTCCTAACTGCAGAGAAGTCATTGCTTGA 489 0.4397 MALHHGLHRRLLLHHPNSTGPGSRNWSRESLTGSSDFDTIMVFILAGLVFAFGLIFSLVLRSIVRCAQRCSRSFAFETPDEAVPRLGSKELKKSAFHQIPKVVYGSGSTSSAATDCSICLGEFMDGVKVRVLPKCNHVFHVKCIDVWLLSHSSCPNCREVIA* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4629 162 SMART FANCL_C_2 112 162 - -
Lja1g4629 162 CDD RING-H2_EL5_like 115 158 - -
Lja1g4629 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 162 IPR013083 -
Lja1g4629 162 SUPERFAMILY RING/U-box 115 161 - -
Lja1g4629 162 Pfam Ring finger domain 115 158 IPR001841 -
Lja1g4629 162 SMART ring_2 116 157 IPR001841 -
Lja1g4629 162 PANTHER RING-H2 FINGER PROTEIN ATL74 9 160 - -
Lja1g4629 162 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Lja1g4629 162 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 9 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4629 Lja-Chr1 60761624 60762112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4629 12 159 C3H Transcription Factor Family AT3G10910 48.077 2.14e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4629 - K19040 gmx:100808245 204.142