LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g4627	ATGGCAATTGTAGCAACCTCTGCCATCTCTCTTATCTTCTTTCTTCTCAATCTCTGCCTCCGAGGCACTTATGGTGACTATGGAGGAGGATGGCAAGGTGGACATGCCACATTTTATGGTGGAGGTGATGCATCAGGCACAATGGGAGGTGCTTGTGGTTATGGAAACTTATACAGCCAAGGCTATGGGACTAACACTGCAGCACTCAGCACTGCTCTTTTCAACAATGGCTTGAGCTGTGGTTCTTGCTATGAGATGAGATGTGACAGTGACCCAAGATGGTGTCTCCCTGGAAGCATATTGGTCACTGCCACAAACTTCTGCCCTCCTAACTATGCACTCTCCAACAGCAATGGTGGCTGGTGCAACCCTCCCCTGCAGCACTTTGATCTTGCTGAGCCTGCTTTCTTGAAGATTGCTCAGTACAAAGCTGGAATTGTTCCAATTTCCTTCAGAAGAGTCTCCTGTGTCAAGAAAGGAGGAATCAGGTTCACAATTAATGGACACTCTTACTTCAACTTGGTTCTGGTCACAAATGTTGGTGGAGCTGGAGATGTTCATTCAGTGTCCATCAAGGGGTCTAAAACTGGATGGCAAACCATGTCAAGGAACTGGGGGCAGAATTGGCAAAGCAACTCTTACCTCAATGGCCAGAGCCTTTCTTTCAAGGTTACCACTAGTGATGGAAGAACTATCATCAGCAACAATGCTGTGCCTGCTGGTTGGCAATTTGGACAAACATTTTCGGGAGGACAGTTTTAG	762	0.4698	MAIVATSAISLIFFLLNLCLRGTYGDYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDSDPRWCLPGSILVTATNFCPPNYALSNSNGGWCNPPLQHFDLAEPAFLKIAQYKAGIVPISFRRVSCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQTMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTIISNNAVPAGWQFGQTFSGGQF*	254

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g4627	253	PRINTS	Expansin/Lol pI family signature	70	88	IPR007118	GO:0005576
	Lja1g4627	253	PRINTS	Expansin/Lol pI family signature	48	66	IPR007118	GO:0005576
	Lja1g4627	253	PRINTS	Expansin/Lol pI family signature	144	160	IPR007118	GO:0005576
	Lja1g4627	253	PRINTS	Expansin/Lol pI family signature	236	250	IPR007118	GO:0005576
	Lja1g4627	253	PRINTS	Expansin/Lol pI family signature	30	45	IPR007118	GO:0005576
	Lja1g4627	253	PRINTS	Expansin/Lol pI family signature	198	212	IPR007118	GO:0005576
	Lja1g4627	253	Pfam	Lytic transglycolase	66	150	IPR009009	-
	Lja1g4627	253	PANTHER	EXPANSIN-A15	5	253	IPR002963	GO:0009664
	Lja1g4627	253	SUPERFAMILY	Barwin-like endoglucanases	13	179	IPR036908	-
	Lja1g4627	253	Pfam	Expansin C-terminal domain	162	239	IPR007117	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g4627	Lja-Chr1	60728034	60729664	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g4627	10	253	Expansin Gene Family	AT2G40610	80.408	6.77e-148	411

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g4627	K20628		-	gmx:547673	483.411

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