Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4627 ATGGCAATTGTAGCAACCTCTGCCATCTCTCTTATCTTCTTTCTTCTCAATCTCTGCCTCCGAGGCACTTATGGTGACTATGGAGGAGGATGGCAAGGTGGACATGCCACATTTTATGGTGGAGGTGATGCATCAGGCACAATGGGAGGTGCTTGTGGTTATGGAAACTTATACAGCCAAGGCTATGGGACTAACACTGCAGCACTCAGCACTGCTCTTTTCAACAATGGCTTGAGCTGTGGTTCTTGCTATGAGATGAGATGTGACAGTGACCCAAGATGGTGTCTCCCTGGAAGCATATTGGTCACTGCCACAAACTTCTGCCCTCCTAACTATGCACTCTCCAACAGCAATGGTGGCTGGTGCAACCCTCCCCTGCAGCACTTTGATCTTGCTGAGCCTGCTTTCTTGAAGATTGCTCAGTACAAAGCTGGAATTGTTCCAATTTCCTTCAGAAGAGTCTCCTGTGTCAAGAAAGGAGGAATCAGGTTCACAATTAATGGACACTCTTACTTCAACTTGGTTCTGGTCACAAATGTTGGTGGAGCTGGAGATGTTCATTCAGTGTCCATCAAGGGGTCTAAAACTGGATGGCAAACCATGTCAAGGAACTGGGGGCAGAATTGGCAAAGCAACTCTTACCTCAATGGCCAGAGCCTTTCTTTCAAGGTTACCACTAGTGATGGAAGAACTATCATCAGCAACAATGCTGTGCCTGCTGGTTGGCAATTTGGACAAACATTTTCGGGAGGACAGTTTTAG 762 0.4698 MAIVATSAISLIFFLLNLCLRGTYGDYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDSDPRWCLPGSILVTATNFCPPNYALSNSNGGWCNPPLQHFDLAEPAFLKIAQYKAGIVPISFRRVSCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQTMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTIISNNAVPAGWQFGQTFSGGQF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4627 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Lja1g4627 253 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Lja1g4627 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Lja1g4627 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Lja1g4627 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Lja1g4627 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Lja1g4627 253 Pfam Lytic transglycolase 66 150 IPR009009 -
Lja1g4627 253 PANTHER EXPANSIN-A15 5 253 IPR002963 GO:0009664
Lja1g4627 253 SUPERFAMILY Barwin-like endoglucanases 13 179 IPR036908 -
Lja1g4627 253 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Lja1g4627 253 Gene3D - 160 253 IPR036749 -
Lja1g4627 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Lja1g4627 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Lja1g4627 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Lja1g4627 253 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Lja1g4627 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Lja1g4627 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Lja1g4627 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Lja1g4627 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Lja1g4627 253 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Lja1g4627 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Lja1g4627 253 Gene3D - 21 156 IPR036908 -
Lja1g4627 253 PANTHER EXPANSIN 5 253 - -
Lja1g4627 253 SUPERFAMILY PHL pollen allergen 158 249 IPR036749 -
Lja1g4627 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Lja1g4627 253 SMART dpbb_1 66 151 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4627 Lja-Chr1 60728034 60729664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4627 10 253 Expansin Gene Family AT2G40610 80.408 6.77e-148 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4627 K20628 - gmx:547673 483.411