Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4615 ATGACATTCAAGCGCAGGAATGGTGGCCGCAACAAGCATGGTCGTGGCCATGTCAAATTCATTCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGGATAAGGCAATCAAGCGATTCCTTGTTAGGAACATTGTTGAACAGGCTGCTGTTAGAGATGTTCAGGAAGCGTGTGTCTATGATCAGTACACACTCCCTAAGCTGTATGTGAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCATGTTGTCAGGGTTCGTTCTCGCACTGATAGGAGGAAGCGTGACCCACCACAGCGTTTCATCAGGCGCAGGGATGATGCACCAAGGCCCGGTCAGCCTGGTCAAGCTCCTCGTCCTGCTGGAGTGGGAGCTCCTCCTCGTGCCTAG 390 0.5256 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPRPGQPGQAPRPAGVGAPPRA* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4615 129 ProSitePatterns Ribosomal protein S26e signature. 73 80 IPR000892 GO:0003735|GO:0005840|GO:0006412
Lja1g4615 129 MobiDBLite consensus disorder prediction 86 129 - -
Lja1g4615 129 MobiDBLite consensus disorder prediction 90 110 - -
Lja1g4615 129 Gene3D Ribosomal protein S26e 1 114 IPR038551 -
Lja1g4615 129 MobiDBLite consensus disorder prediction 113 129 - -
Lja1g4615 129 PANTHER 40S RIBOSOMAL PROTEIN S26 1 127 - -
Lja1g4615 129 PANTHER 40S RIBOSOMAL PROTEIN S26 1 127 IPR000892 GO:0003735|GO:0005840|GO:0006412
Lja1g4615 129 Pfam Ribosomal protein S26e 1 106 IPR000892 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4615 Lja-Chr1 60582888 60584637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4615 1 116 Cytoplasmic Ribosomal Protein Gene Family AT2G40590 83.621 3.46e-69 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4615 K02976 - gmx:100781822 212.616