Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4610 ATGCAGACAAACAAAGAGAAGCAAAGAGAAATGGAAGCCCTTTCTAACATACGTTCCCCTTCACTACTCACAGCTCCTTTGGATACCCAGGTGCTTTCAAAGCAGAGGAAGCATAAATCTCCACACAGTTTCATGGTTCCTTCAAACATCTCTGTCAGGCTTAGCAAAATCTGTTGTACACTGTCAGAAAGTGAGATTGAGGAGAACCCCACAAGCAAGAGTGCCCCTAAATCCAAGGACAGGATGGAGGACTACAATACAGCTATGAAGAGGATGATGAGGAGCCCTTATGAGTATCACCACGATCTGGGTATGAATTACACACTTATAACTGAGAATTTGATTGTGGGATCCCAACCACAGAAACCTGAAGATCTGGATCATCTTAAAAAGGAAGAAGGTGTGGCATACATTCTAAACTTGCAGCAGGATAAGGATGTTGAATATTGGGGAATAGACTTGCAGTCAATAATAAGACGATGTCGTGAACTTGAAATTAGGCACATGAGGAGGCCGGCAGTAGACTTTGATCCAAACTCCTTACGAGGTGCACTACCTAAAGCAGTCTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAAAGTTTATGTGCATTGTACAGCTGGACTTGGAAGAGCTCCGGCAGTGGCAATAGCTTATTTATTCTGGTTTTCTGGCATGAATCTAAATACAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACGCGAAGCTACTTATGATTTGGCTAAGAATGATCCATGGAAGGAGCCATTTGAGAATCTTTCCGACCATGCTTTTGAGGATATTGCAGACTGGGAGAGGAACCTGATTCAAGATCGTATCCGCTCCCTTCGTGGAACTTAG 891 0.4287 MQTNKEKQREMEALSNIRSPSLLTAPLDTQVLSKQRKHKSPHSFMVPSNISVRLSKICCTLSESEIEENPTSKSAPKSKDRMEDYNTAMKRMMRSPYEYHHDLGMNYTLITENLIVGSQPQKPEDLDHLKKEEGVAYILNLQQDKDVEYWGIDLQSIIRRCRELEIRHMRRPAVDFDPNSLRGALPKAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLFWFSGMNLNTAYDMLTSKRPCGPNKRAIREATYDLAKNDPWKEPFENLSDHAFEDIADWERNLIQDRIRSLRGT* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4610 296 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 13 296 - -
Lja1g4610 296 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 242 IPR000387 GO:0016311|GO:0016791
Lja1g4610 296 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 104 249 IPR029021 -
Lja1g4610 296 SMART dsp_5 106 256 IPR020422 GO:0006470|GO:0008138
Lja1g4610 296 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 13 296 - -
Lja1g4610 296 Pfam Dual specificity phosphatase, catalytic domain 127 247 IPR000340 GO:0008138|GO:0016311
Lja1g4610 296 CDD DSP_laforin-like 105 251 IPR045204 GO:0019203|GO:0046838
Lja1g4610 296 ProSiteProfiles Dual specificity protein phosphatase domain profile. 106 263 IPR020422 GO:0006470|GO:0008138
Lja1g4610 296 Gene3D Protein tyrosine phosphatase superfamily 89 296 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4610 Lja-Chr1 60527432 60530451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4610 54 296 Protein tyrosine phosphatase (PTP) family AT3G10940 76.230 2.36e-142 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4610 - - gmx:100805592 472.626