Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4600 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGCAAGAAGCTGAAGAGGGAAGGAGATGTTTCTTCTCAAATGGGAAGAAGACACATGTTGGGACCTCCTGGAACCCTAAACACTATCACCCCTTGTGCAGCATGTAAGCTTCTCAGAAGAAGATGTGCTCAAGAGTGCCCCTTTTCTCCATATTTCTCTCCTCATGAGCCCCAAAAGTTTGCTTCTGTCCACAAAGTTTTTGGTGCCAGCAATGTCTCAAAGATGCTCATGGAGGTACCAGAGTGTCAGAGAGCTGATGCTGCAAATAGTCTAGTTTATGAGGCCAATGTGAGGCTAAGAGACCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAACAAGTTCAATCTTTGCAAGCTGAAGTCAATGTAGTGAGAGGTGAAATACTTAAATACAAACTCAGGGAAGCTAGCATGATATCTTCCTCTCATGTCCCAATGCTCCAATCTTCTGGGTCTGTTTCAATTGCTACTCCTCCACCACCACCGCCACCGCCTCTTCCTCTTCCTCCAAATTCTTCCTCTTCTTCCATGTACATCCAACAACAGAGAGATCCCACCAATTATAGCAGAATTTCTACTGATAATCTTCCTTATTTTGGTTAA 645 0.4419 MSRERERFDEIGKKLKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAEVNVVRGEILKYKLREASMISSSHVPMLQSSGSVSIATPPPPPPPPLPLPPNSSSSSMYIQQQRDPTNYSRISTDNLPYFG* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4600 214 MobiDBLite consensus disorder prediction 1 24 - -
Lja1g4600 214 MobiDBLite consensus disorder prediction 163 214 - -
Lja1g4600 214 Pfam Lateral organ boundaries (LOB) domain 42 138 IPR004883 -
Lja1g4600 214 MobiDBLite consensus disorder prediction 1 33 - -
Lja1g4600 214 MobiDBLite consensus disorder prediction 169 185 - -
Lja1g4600 214 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Lja1g4600 214 MobiDBLite consensus disorder prediction 186 208 - -
Lja1g4600 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 214 - -
Lja1g4600 214 Coils Coil 121 141 - -
Lja1g4600 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 26 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4600 Lja-Chr1 60257423 60258835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4600 27 169 AS2 family AT2G40470 82.993 8.06e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja1g4600 LOB 2.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4600 - - gmx:100786324 340.117