Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4586 ATGCTGGATGGAGGAAATTTACCGCGGCACAACCATCTGCTGCTCATTGTGATAAGTATTTTAGAGTGGGCAGAAGCAATTGAAAATTTGGACCATGGAGACCCTGGGTCAGACAAGAGCTTTGGCATGAAACAAAGGCCTGATGGTGATATTGAGATTGATGAAAGATTTTGGGAGGAGGATTTTATCATCCCAACCTGCCACAAGTGCAACGGAGTTCTCAAACCTGATGTTGTCTTCTTTGGTGATAATGTTCCCAAGGACAGAGCTGATATGGCAATGGAAGCATCTAAGAGATGTGATGATTTTCTTGTACTAGGGTCATCTGTAATGACCATGTCTGCATTTCGACTTGTCAGAGGCAAACATGCTGTGTTTGGAGACACCATGAATGATGAGGTAACAGCCAGGGACAATGTTGTATTTCTGCAACGCTGGTTCAACAAGTTCCCACAATACAGGAATAGAGATTTGTTTCTAACTGGGGAAAGTTATGCAGGTCATTATGTTCCTCAACTTGCAAATCTCATGATTGAAATGAACAAAAAGAACAGTATATTCAATCTGAAAGGCATAGCTTTGGGTAATCCAGTTCTAGAATATGCAACTGACTTCAATTCTAGGGCTGAATTCTTCTGGTCTCATGGACTAATATCAGATTCAACATATAACATGTTCACTAGAGTGTGTAACTATTCTCGGTACGCTATAGAGACTCAGTTTCACCTATTTGTTCAAAGGTTATGGGACAGTGTTATCACAATCGAAGATTATTTGTCCTCAAACACATCAAATGAGAGGATAGATGTGTGTGTAGATGACAAGGTTACAAACTACTTAAAACGTAAAGATGTAGAAGAGGCACTTCATGCAAAGCTTGTTGGAGTTCGGAAGTGGGATGTCTGCAGCAACGTCCTGGACTATGATATGCTCAACCTGGAAGTGCCTACACTCCCAATTGTTGGATCACTGATAAACGCTGGTGTTCGGGTCTTAATTTACAGTGGAAATCAAGACTCAGTAATTCCATTGACCGGAAGCCACACCTTAGTTCAAAAGTTGGCAACAAAATTAGGACTGAATACAACAGTCCCTTACAGAGTATGGTTTGAAGGCCAGCAGGTTGGTGGGTGGACTCAAGTTTATGGAAGCATCCTTTCGTTTGCCACTGTTAGAGGTGCCTCTCATGAAGCCCCATTCTCTCAGCCTGAAAGATCATTTGTGTTGTTTAAGTCATTCTTGGAAGGAAGGCCTTTACCTGAAGTTTTCTGA 1272 0.4167 MLDGGNLPRHNHLLLIVISILEWAEAIENLDHGDPGSDKSFGMKQRPDGDIEIDERFWEEDFIIPTCHKCNGVLKPDVVFFGDNVPKDRADMAMEASKRCDDFLVLGSSVMTMSAFRLVRGKHAVFGDTMNDEVTARDNVVFLQRWFNKFPQYRNRDLFLTGESYAGHYVPQLANLMIEMNKKNSIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYNMFTRVCNYSRYAIETQFHLFVQRLWDSVITIEDYLSSNTSNERIDVCVDDKVTNYLKRKDVEEALHAKLVGVRKWDVCSNVLDYDMLNLEVPTLPIVGSLINAGVRVLIYSGNQDSVIPLTGSHTLVQKLATKLGLNTTVPYRVWFEGQQVGGWTQVYGSILSFATVRGASHEAPFSQPERSFVLFKSFLEGRPLPEVF* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4586 423 Gene3D alpha/beta hydrolase 121 419 IPR029058 -
Lja1g4586 423 PANTHER CARBOXYPEPTIDASE 116 421 - -
Lja1g4586 423 ProSitePatterns Serine carboxypeptidases, serine active site. 160 167 IPR018202 GO:0004185
Lja1g4586 423 ProSiteProfiles Sirtuin catalytic domain profile. 1 182 IPR026590 -
Lja1g4586 423 SUPERFAMILY DHS-like NAD/FAD-binding domain 59 122 IPR029035 -
Lja1g4586 423 PRINTS Carboxypeptidase C serine protease (S10) family signature 146 171 IPR001563 GO:0004185|GO:0006508
Lja1g4586 423 PRINTS Carboxypeptidase C serine protease (S10) family signature 386 399 IPR001563 GO:0004185|GO:0006508
Lja1g4586 423 SUPERFAMILY alpha/beta-Hydrolases 129 420 IPR029058 -
Lja1g4586 423 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 116 421 IPR001563 GO:0004185|GO:0006508
Lja1g4586 423 ProSitePatterns Serine carboxypeptidases, histidine active site. 386 403 IPR033124 GO:0004185
Lja1g4586 423 Gene3D SIR2/SIRT2 'Small Domain' 38 86 IPR026591 -
Lja1g4586 423 Pfam Serine carboxypeptidase 129 416 IPR001563 GO:0004185|GO:0006508
Lja1g4586 423 Pfam Sir2 family 64 111 IPR003000 GO:0070403
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4586 Lja-Chr1 60008320 60012325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4586 285 419 Calmodulin-binding Proteins AT2G22960 29.412 5.38e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4586 K16297 - gmx:100795668 483.411