Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4584 ATGGATCAGGATCACACTGCAGTCCGAAACTTAAAGCGTAAACAAGAAGAATGCAATAATAATACACAGCTGATAGATTCTCAACGAGATCAAACCGACAAAATTTTCCAACAGATTCTTGTCCTCAAATCCGCTGCTTCATCCTCTCTCTCAGATCGTGCTACCCGTGCTACCGCAAAAACTGCCCTAAACGTGCTTTCTGAACTTGCTAGAGACGAGGGACTTGTGGATACTATAATGAACTTTGACGTCGAAGTTCCGGATGGCTTGCAGATCGGATTCGTTTTGCTCGTCGGCCTTCTGTCTTATAAACCAGAGTACCAACAACCCATTGTTGATGCTGGAGTCCCGCCCTATCTTGTTGATTTCTTAAGGGTGCATAAAGCTGGTCTCATGTCTCAAACACTTGTTGGTCTTCTTATTATAATAGTAGACACAATAACTAATCTTGCTCGTACAAACATCAACACTATGAACCTTATCAGGAATGAAGGTGGTATTCCACTTCTTGTTGAATTGCTTGAATTCAATGATTCATGTGTGCAGAGGACAGCGGCAGGAGCCTTACGAACTCTTGCATTTGACAATGATGACAACACAAATCAAATTGTTGAATGCAATGCGTTGCCCACTCTCGTATTGATGCTTCAATCAGAGGATCCTACTATACATTATGAGGCGATAAGTGTAGTTAGAAGTCTGATCCACACTTCGCAGAATATTAAGGAAGTTGTTCTTGAAGTTGGCGCTTTACAACCGGTGATTTTGTTATTGAGGTCCTCTTGTTTGAAGACCCAAAAAGTAGCAACTTCTTTACTTGGTGAATTTGCTACATCATATTCGTGTTCCAAGGCTCGGATTGCCCAAAGAGGGGCTATAAGACCTTTGGTTGACTTGCTTATGTCCTCAGATGAACTACTTTGTGCAATGTCAGCTTTTGTTCTTGGGATGTTAGCAGAGGACTCCGACAATCAAGTTGGTATTGCTTATAATGGAGGTATAGAGCCTCTGCTCAATCTTCTTGGCTCAAAGAATGAGTTTGTCCAACACTATGCAGCCTCCACTCTCTCTTTTGTCGCTTATAATGAGGACAATGTTGTAGATATTATTAAGGCTGGTGGTCTTCAAAAACTGCTCAATGGACATACTGAAGCTTCTGATTATGTGTGTCGGTGTGTGGCAATGATATTAAAAAGATTAAAGGAGAACATTTATGGGAGAGTACTGAAACATCTGTTGAATCTTATGCGCTTTGCAGACAAAGATGTTCAAAGACTTGTAGTTATTGCTCTTGCTCATTTATGTTCCCCTAATGATCATAAAACTATTTTCATTGTTAATAATGCTGCTAAATCTTCAGGACTAGAATTGCTTCTGGATCTTCTTGAATCTAAAAACCTAAAGCAGAAGAGTGATGCTTCAGCAGCGCTTCTCAAGTTATCTACCAAAGCCACATTTGTCTCTATTGTTGATGCTGCTTCTCCATTACTATCATCCAAAGTGTACTTGGACGAACAATATGTGAACAATCCCAAACTATCTAATGTCACATTCTTAGTTGAAGGTAAAAGGTTTTATGCTCATAGAGCTTGCTTGCAAGCTACTTCAGATGTATTTCACGCAATGTTTGATGGGGGTTATAAGGAAAGTGAAGCCAATGATATAGAGATTCCAAATATTAAATGGGATGTCTTTAGGATGATGATAAGATTTATTTACACCGGAACAGTAGATGTCAAATTGGATATTGCTAAGGACCTCCTCATAGCTGCAGATCAGTATCTTCTGGAAGATCTTAAGCATCTTTGTGCACATGCAATTTCTCAAGATATTTATGTGGACAATGTTTCACTAATGTACGATATGTCAGAGACTTACAATGCTACATCATTAAGAAACGCGTGCATACTGTTTGTCATGGAGCAATTTGATAAGTTGAGTGTCAAACCATGGTATTGTAGCCTGGTTTGCCGCATTGCACCCAGCATACACAAATTTTTCTCAGATTTACTAACCAAGCCAGCTGATTCAGAGGACCATTGA 2043 0.397 MDQDHTAVRNLKRKQEECNNNTQLIDSQRDQTDKIFQQILVLKSAASSSLSDRATRATAKTALNVLSELARDEGLVDTIMNFDVEVPDGLQIGFVLLVGLLSYKPEYQQPIVDAGVPPYLVDFLRVHKAGLMSQTLVGLLIIIVDTITNLARTNINTMNLIRNEGGIPLLVELLEFNDSCVQRTAAGALRTLAFDNDDNTNQIVECNALPTLVLMLQSEDPTIHYEAISVVRSLIHTSQNIKEVVLEVGALQPVILLLRSSCLKTQKVATSLLGEFATSYSCSKARIAQRGAIRPLVDLLMSSDELLCAMSAFVLGMLAEDSDNQVGIAYNGGIEPLLNLLGSKNEFVQHYAASTLSFVAYNEDNVVDIIKAGGLQKLLNGHTEASDYVCRCVAMILKRLKENIYGRVLKHLLNLMRFADKDVQRLVVIALAHLCSPNDHKTIFIVNNAAKSSGLELLLDLLESKNLKQKSDASAALLKLSTKATFVSIVDAASPLLSSKVYLDEQYVNNPKLSNVTFLVEGKRFYAHRACLQATSDVFHAMFDGGYKESEANDIEIPNIKWDVFRMMIRFIYTGTVDVKLDIAKDLLIAADQYLLEDLKHLCAHAISQDIYVDNVSLMYDMSETYNATSLRNACILFVMEQFDKLSVKPWYCSLVCRIAPSIHKFFSDLLTKPADSEDH* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4584 680 SUPERFAMILY POZ domain 505 608 IPR011333 -
Lja1g4584 680 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 3 678 - -
Lja1g4584 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 374 IPR000225 GO:0005515
Lja1g4584 680 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 678 IPR044282 -
Lja1g4584 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 199 IPR000225 GO:0005515
Lja1g4584 680 Gene3D - 283 498 IPR011989 -
Lja1g4584 680 Coils Coil 11 31 - -
Lja1g4584 680 SUPERFAMILY ARM repeat 143 495 IPR016024 -
Lja1g4584 680 SMART BTB_4 514 611 IPR000210 GO:0005515
Lja1g4584 680 Pfam Armadillo/beta-catenin-like repeat 160 193 IPR000225 GO:0005515
Lja1g4584 680 Pfam Armadillo/beta-catenin-like repeat 196 234 IPR000225 GO:0005515
Lja1g4584 680 Gene3D - 26 282 IPR011989 -
Lja1g4584 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 291 333 IPR000225 GO:0005515
Lja1g4584 680 ProSiteProfiles BTB domain profile. 514 581 IPR000210 GO:0005515
Lja1g4584 680 SMART arm_5 104 152 IPR000225 GO:0005515
Lja1g4584 680 SMART arm_5 238 278 IPR000225 GO:0005515
Lja1g4584 680 SMART arm_5 321 361 IPR000225 GO:0005515
Lja1g4584 680 SMART arm_5 279 320 IPR000225 GO:0005515
Lja1g4584 680 SMART arm_5 153 194 IPR000225 GO:0005515
Lja1g4584 680 SMART arm_5 397 436 IPR000225 GO:0005515
Lja1g4584 680 SMART arm_5 196 236 IPR000225 GO:0005515
Lja1g4584 680 Pfam BTB/POZ domain 506 609 IPR000210 GO:0005515
Lja1g4584 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 207 249 IPR000225 GO:0005515
Lja1g4584 680 Gene3D Potassium Channel Kv1.1; Chain A 505 648 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4584 Lja-Chr1 59969932 59973974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4584 224 484 U-box Gene Family AT5G67340 27.509 1.42e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja1g4584 BTB 3.6e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4584 - - qsu:112036025 668.692