Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4575 ATGGCGCCGAAGAAGGAGAGGTCACCAAGGGTGAGCCGAAACCCTGAATTGATCAGGGGAATCGGGAAATACTCCAGGTCCAAGATGTACCACAAGAGGGGTCTCTGGGCCATCAAGGCCAAGCACGGCGGCACTTTCCCTCGCCACGATGCCAAGCTTAAGCCTGAAGCTCCTGCTCAGAAGGCACCTAAGTTCTACCCTGCTGATGATGTCAAGAAGCCTCTGCTCAACAAACACAAACCCAGACCCACCAAGCTCAGGGCTAGCATTACCCCTGGGACTGTGCTGATCTTGCTTGCAGGCAGATTCAAGGGGAAGAGGGTTGTGTTTCTGAGGCAGCTTCCTTCTGGGTTGCTTCTTGTGACTGGTCCCTTCAAGATTAATGGAGTTCCTTTGAGACGTGTGAATCAGTCCTATGTGATTGCCACATCTACCAAAGTAGATGTCTCTGCAGTCAAGTCGGATAAATTTGATGACAAATACTTTTCAAAGGAAGCCCAGAAAAAGAAAAAGAAGGGAGAGGGAGAGTTCTTTGAAGCAGACAAGGAGGAGAAAAATGTGCTCCCCCAGGAGAAGAAGGATGACCAAAAAACTGTTGATTCTGCATTGTTAACCGCCATCGAGAGTGTTCCAGACCTGAAGTCTTACCTAGGTGCCAGGTTTTCCTTGAAGTCTGGCATGAAGCCTCATGAGCTTAAATTCTAG 705 0.4908 MAPKKERSPRVSRNPELIRGIGKYSRSKMYHKRGLWAIKAKHGGTFPRHDAKLKPEAPAQKAPKFYPADDVKKPLLNKHKPRPTKLRASITPGTVLILLAGRFKGKRVVFLRQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDVSAVKSDKFDDKYFSKEAQKKKKKGEGEFFEADKEEKNVLPQEKKDDQKTVDSALLTAIESVPDLKSYLGARFSLKSGMKPHELKF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4575 234 Pfam Ribosomal protein L6, N-terminal domain 3 59 IPR005568 GO:0003735|GO:0005840|GO:0006412
Lja1g4575 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 - -
Lja1g4575 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lja1g4575 234 Gene3D - 88 172 IPR014722 -
Lja1g4575 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lja1g4575 234 SUPERFAMILY Translation proteins SH3-like domain 88 174 IPR008991 -
Lja1g4575 234 CDD KOW_RPL6 82 234 IPR041997 -
Lja1g4575 234 ProSitePatterns Ribosomal protein L6e signature. 128 146 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4575 Lja-Chr1 59880100 59882148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4575 3 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 78.448 2.49e-120 340