Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4572 ATGGATTTAGCCGCGAAACTCCACCACCTCGACCTCACCGGCGCCGTCATTCTAGACACACGAAAGCCCTCCGCTACACGCCACCGTTTTCCGCCGCGCTCCCTCACCCAACCCGCCAGACCCACCATCACCACCTTAACTCACACCCACCACCGCTTCCTCACCCCAATTAGGCCCAATTCTTCCACCTCCGGCGCCGCAGCTACTGTCACCGCCGTCGACGACATCGAGTCTCTCTTCTCCGACCCTTCCGACGACAAACTCTACTCGAACAAGAAATCGAACACCACCGGAGCTTCAAGCGTTTCTTCCGGTGTGAGGTTGGAGAACATCACCAAAACCTACAAGGGTGTCACGGTGCTGAAGGATGTCACATGGGAGGTGAAGAAAGGGGAGAAAGTGGGTTTGGTTGGCGTGAACGGTGCAGGGAAGACGACGCAGATGAGGATAATCGCGGGTTTGGAGGAACCGGATTCAGGGAACGTGGTGAAGGCGAGGCCGAACATGAAAATCGCGTTTCTGAGTCAGGAGTTTGAGGTGTCGCTGAGCAGGACGGTGAGGGAGGAGTTTATGAGTGCGTTTAAGGAGGAAATGGAGGTTGCGGCGAAGCTGGAGAAGGTGCAGAGGGCGCTTGAGGGGGCTGTCAATGATTTGGATTTGATGGGGAGGTTACTGGATGAATTTGATTTGCTTCAGAGGAGGGCACAGTCTGTGAATTTGGATGTGGTTGATTCTAAGATAAGTAAATTGATGCCTGAACTTGGGTTTGCTCCTGAAGATTCTGATAGGTTAGTGGCGTCTTTTAGTGGTGGGTGGCAGATGAGGATGTGTCTTGGCAAGATTCTACTTCAGGATCCTGATTTATTATTGTTAGATGAGCCGACGAATCACCTTGATCTTGACACGATTGAGTGGCTTGAAGAGTATCTTAACAAGCAGGATGTGCCGATGGTTATCATTTCTCATGACAGGGCTTTTCTTGATCAGCTGTGTACGAAAATTGTGGAAACTGAGATGGGTGTTTCCAGGACGTTTGAGGGGAATTATTCTCAGTTTGTACTTTCAAAGGCGGAATGGATTGAAGCGCAGTATGCTGCGTGGGAGAAGCAGCAGAAAGAAATTGAACAGACAAGAGGCCTGATAAGTAGGTTAGGCGCAGGAGCAAATTCTGGCAGGGCTTCAACTGCTGAGAAGAAGCTGGAGAGACTTCAGGAAGAGGAACTAGTTGAGAAACCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATTTGTTGCAACAATTAAGAACATGGATTTTGGTTTTGAAGATAAGACGCTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCTAATGGGTGTGGCAAGAGTACTTTACTGAAATTGATTATGGGTTTGGAGAAGCCAGTTGGGGGTGAAGTCATGCTTGGGGAGCATAATGTATTGCCTAACTATTTTGAGCAAAATCAGGCTGAGGCACTTGATCTGGACAAGACGGTGCTTGAGACAGTAGAGGAAGCTGCAGAGGATTGGAGACGTGATGATATTAAAGGACTTCTTGGACGTTGTAATTTTAAAGCTGACATGCTTGACCGAAAAGTTTCCCTTTTGAGTGGTGGTGAGAAGGCACGGCTGGCATTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTATTGGATGAACCAACCAATCACTTGGATATACCATCTAAAGAAATGCTTGAGGAGGCTATATCTGAGTACGAAGGCACTGTCATCACTGTATCTCATGATAGATACTTCATAAAGCAGATAGTTAACAGAGTGATAGAAGTTGACGATGGCACTTTACAGGATTATGCAGGCGATTACAATTATTATTTAGAGAAGAATCTTGATGCTCGGGAAAGAGAGCTTGAACGCGAGGCAGAACTTGAGGACAAAGCTCCTAAAGTGAAAGCAAAATCCAAGATGTCCAAGGCAGAGAAAGAAGCACGGAAGAAGCAAAAGATGCAGGCCTTTCAGCAGGCAAAACAGAAGTCTAAAGGTGTGAAAAATTCCAAGAGATGGAATTGA 2103 0.4679 MDLAAKLHHLDLTGAVILDTRKPSATRHRFPPRSLTQPARPTITTLTHTHHRFLTPIRPNSSTSGAAATVTAVDDIESLFSDPSDDKLYSNKKSNTTGASSVSSGVRLENITKTYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVVKARPNMKIAFLSQEFEVSLSRTVREEFMSAFKEEMEVAAKLEKVQRALEGAVNDLDLMGRLLDEFDLLQRRAQSVNLDVVDSKISKLMPELGFAPEDSDRLVASFSGGWQMRMCLGKILLQDPDLLLLDEPTNHLDLDTIEWLEEYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQFVLSKAEWIEAQYAAWEKQQKEIEQTRGLISRLGAGANSGRASTAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRFVATIKNMDFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPVGGEVMLGEHNVLPNYFEQNQAEALDLDKTVLETVEEAAEDWRRDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYEGTVITVSHDRYFIKQIVNRVIEVDDGTLQDYAGDYNYYLEKNLDARERELEREAELEDKAPKVKAKSKMSKAEKEARKKQKMQAFQQAKQKSKGVKNSKRWN* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4572 700 Pfam ABC transporter 121 296 IPR003439 GO:0005524
Lja1g4572 700 MobiDBLite consensus disorder prediction 650 680 - -
Lja1g4572 700 SMART AAA_5 130 345 IPR003593 -
Lja1g4572 700 SMART AAA_5 457 625 IPR003593 -
Lja1g4572 700 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 106 364 IPR003439 GO:0005524
Lja1g4572 700 MobiDBLite consensus disorder prediction 650 700 - -
Lja1g4572 700 Pfam ABC transporter 335 422 IPR032781 -
Lja1g4572 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 341 IPR027417 -
Lja1g4572 700 ProSitePatterns ABC transporters family signature. 268 282 IPR017871 GO:0005524
Lja1g4572 700 Gene3D - 103 386 IPR027417 -
Lja1g4572 700 Gene3D - 395 664 IPR027417 -
Lja1g4572 700 ProSitePatterns ABC transporters family signature. 552 566 IPR017871 GO:0005524
Lja1g4572 700 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 46 690 - -
Lja1g4572 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 638 IPR027417 -
Lja1g4572 700 Coils Coil 660 689 - -
Lja1g4572 700 CDD ABCF_EF-3 434 625 - -
Lja1g4572 700 CDD ABCF_EF-3 106 336 - -
Lja1g4572 700 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 433 648 IPR003439 GO:0005524
Lja1g4572 700 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 46 690 - -
Lja1g4572 700 Pfam ABC transporter 449 580 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4572 Lja-Chr1 59859333 59864771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4572 435 650 Calmodulin-binding Proteins AT2G36910 25.620 6.71e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4572 - - gmx:100797121 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4572 1 59859333 59864771 Lja1g4572 1 59859333 59864771 ECH