Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4570 ATGGACTATTTTCTTGGAAACCCTAATCCTAACCCTGCCGTGAACATGGCTCCTTTCTTTTCCTCTGATTTTGAGATATCTGATTTTCTTGCCCTTGATGATGTTGTTGATCATCATCCAGAGTCTTGGTCGCAAAGCACAGAAACAGAATCATCTGAGAAAGCTGCAGCCTCCAGCGATGCCAGTCATGGATTTGGTGATGCAACCTCTACAAACAATAACATTACTTTTGACAGAAAATGTGAAAGTGGGGTTAAGCGAAACAAGGTGGAAGATCAAGTGAGCCCAAGGGTCACGTTTAGAACCAGATCGCAGCTTGAGATTATGGATGATGGATACAAATGGAGGAAGTATGGGAAGAAGTCAGTCAAGAACAATCCCAATCTCAGGAACTACTACAAGTGTTCAGGTGAGGGATGCAGTGTAAAGAAAAGGGTGGAAAGAGATAGAGACGACTCGAGCTATGTGTTGACAACTTATGATGGTATCCACAATCATGAGAGCCCGTGTACTTCCTATTATGGCCAAATGTCCTTAGTGCATTCTAATGTTTGGGCAGTCTAG 564 0.4309 MDYFLGNPNPNPAVNMAPFFSSDFEISDFLALDDVVDHHPESWSQSTETESSEKAAASSDASHGFGDATSTNNNITFDRKCESGVKRNKVEDQVSPRVTFRTRSQLEIMDDGYKWRKYGKKSVKNNPNLRNYYKCSGEGCSVKKRVERDRDDSSYVLTTYDGIHNHESPCTSYYGQMSLVHSNVWAV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4570 187 MobiDBLite consensus disorder prediction 40 71 - -
Lja1g4570 187 ProSiteProfiles WRKY domain profile. 104 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g4570 187 SMART WRKY_cls 109 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g4570 187 Pfam WRKY DNA -binding domain 110 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g4570 187 Gene3D WRKY domain 96 162 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g4570 187 MobiDBLite consensus disorder prediction 45 71 - -
Lja1g4570 187 SUPERFAMILY WRKY DNA-binding domain 101 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g4570 187 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 174 IPR044810 GO:0003700
Lja1g4570 187 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 21 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4570 Lja-Chr1 59817525 59819554 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4570 7 179 WRKY Transcription Factor Family AT5G64810 46.961 9.50e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g4570 WRKY 5.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4570 - - gmx:100127396 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4570 1 59817525 59819554 Lja1g4570 1 59817525 59819554 ECH
Lja5g2833 5 55829086 55834685 Lja1g4570 1 59817525 59819554 PCT