Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4566 ATGAAACCCATGTACAGCACCATCTCTCTCTCGCTATTATTGGTCCTCTTATCTTTCTTTCTCCACCCTACACCATGTTTTTCCAGACTCAACAACCCAACGGAGAACCTTCTCAACTTCAAAGCCACTCTCCCCAACCCGAACCTCCTCCCGAACTGGCTCCCGAACCGGAACCCATGCTCCTTCACCGGAATCACCTGTAACCAAACTACAATAACATCCATAGTCCTCACCGGAATCCCCCTCAACACCAACCTCACCGTCGTCGCCACCTACCTTCTCACCCTCGACCACCTCCACCTCCTCACCTTAAAATCCACTAACCTCACCTCCTCCGCCTCCATTTCCACCACCTGCGCCACCTCACTCACCGCTATAGATCTATCTCAAAACACTTTCTCCGGTCCCTTCTCCGCCTTGTCGTTTCTATCCTCCTGCTCCAACCTCCAATCCCTCAACCTCTCCAACAACCTCCTGGAATTTGATTCGCCGCGCTGGAAGCTCAGCTCCACCGTGCAAATCCTTGACCTCTCTTACAACAAGTTCACTGGCCCCGCCGTCTTCCCCTGGGTTCTCACTACTGGGTTAACCCACTTGAATCTCCGGGGAAACAAAATCACCGGCGAAACTGACTTCTCCGCCGCGAGCAACTCTCTCGAGTATCTAGACCTCGCCGCCAACAATTTCACCGTCTCCATTCCTTCATTCGGCGACTGCTCTTCGCTTCAGCATCTTGACCTCTCTGCAAACAAATACTACGGCGACATTGCGAGGACTCTCTCCCCCTGCAAGAGCCTCCTCCACCTCAACCTCTCCGGCAACCAATTCTCCGGCGCGGTTCCTTCACTCCCCTCCGGCTCACTCAAGTTCGTCTACCTCGCCGGAAACCACTTCCGCGGTCAGATTCCGGCGGGGCTAGCCGACCTCTGCACCACACTCGTCGAGCTCGACTTGTCCTCCAACAACCTCTCCGGCGCAGTTCCCGCCGAGCTCGGCTCCTGCTCCTCCCTGGAGTCCCTCGACATCTCCAGCAACCGCTTCACCGGCGCACTCCCGGTGGAAGTTTTCACAGAAATCGCCACCCTCAAACAGCTCGCCGTGTCGTTCAACGAGTTCGTCGGTCCTCTCCCGGAGAAGCTCTCCAAGCTCGCGAGCTTGGAATCGCTGGATCTGAGCTCCAACAACTTCACCGGTTCAATCCCGGAGTGGCTCTGCGAGGATCCGATGAACAATTTGAAGGAGCTTTTCCTGCAGAATAACCGTTTCACCGGTCCTGTTCCGGCCACGCTCAGCAACTGCTCCAACCTCGTCGCGCTCGACCTGAGCTTCAACTTCCTCACCGGAACCATCCCTCCGAGCTTGGGTTCCCTCACGAAGCTTCGCGATTTGATCATGTGGCTGAACCAGCTCCATGGTGAGATCCCCCCTGAGCTGAGCCAGATGCAGAGCTTGGAGAATCTCATCCTGGACTTCAATGAGTTCACCGGGAACATCCCCTCCGGTCTTGTGAACTGCACCAAGCTCAATTGGATCTCCCTCTCCAACAACAAGCTCAGCGGCGAGATTCCACCGTGGATTGGGAAGCTCACGAACCTCGCGATCCTCAAGCTCAGCAACAACTCGTTCTCCGGTAGCATCCCGCCGGAGCTCGGGGATTGTCCTAGCTTGATTTGGCTAGATCTGAACACTAATCAACTCACCGGGCCAATCCCGCCGGAGCTTTTCAAGCAATCGGGGAAGATCAGGGTGAATTTCATCAGCGGGAAGACGTATGTGTACATCAAGAATGATGGGAGCAGGGAGTGCCATGGTGCAGGAAACTTGCTGGAGTTTGCAGGGATTAGCCAGCAGCAGCTGAACAGGATTTCTACGAGGAACCCTTGTAATTTCACTAGGGTTTATGGAGGTAAGATTCAGCCCACGTTTAAAAACACTGGTTCCATGATCTTTCTGGATATGTCTCACAACATGTTGACTGGTCCTTTACCTAAGGAACTTGGAGAAATGTACTATCTCTATATATTGAATTTGGGGCACAATAACCTTTCTGGTAGCATTCCTCAAGAGCTTGGGAGGGTGAAGAATCTCAACATCCTTGACCTCTCCTACAACAGGCTCCAAGGTCAGATTCCACAGGCATTGACAGGGCTTTCATTGCTCACTGAGCTGGATTTGTCAAACAATTTACTCAATGGGATGATTCCCGAATCGGGTCAATTCGATACATTTCCGTCTGCGCGGTTCTTGAACAACTCTGGTCTGTGTGGGGTTCCTCTTCTTCCGTGTGGGACTGATACAGGAGTGAGTGCTGATGCTCAGCATCAGAGGTCGCATAGGAAGCAGGCGTCTCTTGCGGGGAGTGTGGCTATGGGATTGTTGTTCTCCCTGTTATGTGTGTTTGGTTTGATTATAATTGCAATTGAGACTAAGAAAAGGAGGAAGAAGAAGGAGGCTGCAATTGATGGCTACATTGATGGAAATGGCAATTCTCATTCAGGCAATGCCAATAATGTCAGCTGGAAGTTCACCAGTGCGCGTGAAGCGCTCAGCATAAACCTCGCAACGTTTGAGAAGCCGCTCCGGAAGCTTACTTTTGCTGATCTTCTCGAAGCCACCAATGGCTTTCACAATGACAGCCTCATTGGTTCAGGGGGTTTTGGTGACGTCTACAAGGCTCAATTGAAGGATGGGAGTGTGGTTGCCATCAAGAAGTTGATACATGTGAGTGGACAAGGGGACAGGGAATTCACTGCTGAAATGGAAACCATTGGGAAAATTAAGCATAGGAACCTTGTTCCTCTTCTGGGATACTGCAAGGTTGGAGAGGAAAGGCTCTTGGTTTATGAGTACATGAAATATGGAAGCCTTGAAGATGTTCTGCATGACCCGAAGAAAGCTGGGATCAAGCTGAATTGGAATGTGAGGAGGAAGATTGCAATCGGAGCTGCTAGAGGGTTGGCTTTTCTTCACCACAATTGTATCCCCCATATCATTCACAGGGACATGAAATCTAGCAATGTATTACTTGATGAAAACCTTGAAGCCAGGGTCTCTGATTTTGGAATGGCTAGAATGATGAGTGCTATGGATACTCATCTAAGTGTCAGCACGCTAGCCGGCACACCAGGTTATGTTCCTCCCGAGTACTATCAGAGCTTCAGATGCTCCACAAAAGGTGATGTTTATAGCTACGGCGTCGTTCTGCTGGAGCTTCTAACAGGGAGAAGGCCAACAGATTCGGCTGATTTTGGTGACAATAATCTTGTGGGGTGGGTTAAACAACATGCCAAACTGAAAATAAGCGATGTTTTCGATCCAGAGCTCATGAAGGAAGACCCCAATCTGGAGATTGAGCTCTTGCAGCACTTGAAGGTAGCTTGTGCTTGTTTGGATGACAGACCGTGGCGGCGTCCTACAATGATTCAAGTCATGGCAATGTTCAAGGAAATCCAAGCAGGGTCCGGGATGGATTCTCAGTCCACTATAGCCACTGATGATGAAGGTTTCAATGCTGTCGAAATGGTGGAGATGAGCATCAAGGAAGTCCCTGAGTTGAGCAAGCATTAG 3567 0.5094 MKPMYSTISLSLLLVLLSFFLHPTPCFSRLNNPTENLLNFKATLPNPNLLPNWLPNRNPCSFTGITCNQTTITSIVLTGIPLNTNLTVVATYLLTLDHLHLLTLKSTNLTSSASISTTCATSLTAIDLSQNTFSGPFSALSFLSSCSNLQSLNLSNNLLEFDSPRWKLSSTVQILDLSYNKFTGPAVFPWVLTTGLTHLNLRGNKITGETDFSAASNSLEYLDLAANNFTVSIPSFGDCSSLQHLDLSANKYYGDIARTLSPCKSLLHLNLSGNQFSGAVPSLPSGSLKFVYLAGNHFRGQIPAGLADLCTTLVELDLSSNNLSGAVPAELGSCSSLESLDISSNRFTGALPVEVFTEIATLKQLAVSFNEFVGPLPEKLSKLASLESLDLSSNNFTGSIPEWLCEDPMNNLKELFLQNNRFTGPVPATLSNCSNLVALDLSFNFLTGTIPPSLGSLTKLRDLIMWLNQLHGEIPPELSQMQSLENLILDFNEFTGNIPSGLVNCTKLNWISLSNNKLSGEIPPWIGKLTNLAILKLSNNSFSGSIPPELGDCPSLIWLDLNTNQLTGPIPPELFKQSGKIRVNFISGKTYVYIKNDGSRECHGAGNLLEFAGISQQQLNRISTRNPCNFTRVYGGKIQPTFKNTGSMIFLDMSHNMLTGPLPKELGEMYYLYILNLGHNNLSGSIPQELGRVKNLNILDLSYNRLQGQIPQALTGLSLLTELDLSNNLLNGMIPESGQFDTFPSARFLNNSGLCGVPLLPCGTDTGVSADAQHQRSHRKQASLAGSVAMGLLFSLLCVFGLIIIAIETKKRRKKKEAAIDGYIDGNGNSHSGNANNVSWKFTSAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKLNWNVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARMMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGRRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNLEIELLQHLKVACACLDDRPWRRPTMIQVMAMFKEIQAGSGMDSQSTIATDDEGFNAVEMVEMSIKEVPELSKH* 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4566 1188 Pfam Brassinosteroid receptor island domain 579 643 IPR045381 -
Lja1g4566 1188 SMART serkin_6 875 1147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4566 1188 SMART LRR_typ_2 409 432 IPR003591 -
Lja1g4566 1188 SMART LRR_typ_2 334 358 IPR003591 -
Lja1g4566 1188 SMART LRR_typ_2 457 481 IPR003591 -
Lja1g4566 1188 SMART LRR_typ_2 383 407 IPR003591 -
Lja1g4566 1188 SMART LRR_typ_2 529 553 IPR003591 -
Lja1g4566 1188 SMART LRR_typ_2 693 716 IPR003591 -
Lja1g4566 1188 SMART LRR_typ_2 554 577 IPR003591 -
Lja1g4566 1188 SMART LRR_typ_2 717 740 IPR003591 -
Lja1g4566 1188 Pfam Leucine Rich Repeat 435 457 IPR001611 GO:0005515
Lja1g4566 1188 Gene3D Ribonuclease Inhibitor 37 762 IPR032675 -
Lja1g4566 1188 PRINTS Leucine-rich repeat signature 693 706 - -
Lja1g4566 1188 PRINTS Leucine-rich repeat signature 313 326 - -
Lja1g4566 1188 Pfam Protein kinase domain 875 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4566 1188 SUPERFAMILY Protein kinase-like (PK-like) 861 1152 IPR011009 -
Lja1g4566 1188 PANTHER SYSTEMIN RECEPTOR SR160 10 1162 - -
Lja1g4566 1188 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 1162 - -
Lja1g4566 1188 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Lja1g4566 1188 Gene3D Phosphorylase Kinase; domain 1 835 950 - -
Lja1g4566 1188 SUPERFAMILY RNI-like 287 573 - -
Lja1g4566 1188 Gene3D Transferase(Phosphotransferase) domain 1 951 1152 - -
Lja1g4566 1188 Gene3D - 584 644 - -
Lja1g4566 1188 ProSitePatterns Serine/Threonine protein kinases active-site signature. 997 1009 IPR008271 GO:0004672|GO:0006468
Lja1g4566 1188 SUPERFAMILY L domain-like 52 370 - -
Lja1g4566 1188 ProSitePatterns Protein kinases ATP-binding region signature. 881 904 IPR017441 GO:0005524
Lja1g4566 1188 ProSiteProfiles Protein kinase domain profile. 875 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4566 1188 CDD STKc_IRAK 881 1150 - -
Lja1g4566 1188 Pfam Leucine rich repeat 218 276 IPR001611 GO:0005515
Lja1g4566 1188 Pfam Leucine rich repeat 672 730 IPR001611 GO:0005515
Lja1g4566 1188 Pfam Leucine rich repeat 336 396 IPR001611 GO:0005515
Lja1g4566 1188 SUPERFAMILY L domain-like 639 763 - -
Lja1g4566 1188 Pfam Leucine Rich repeat 310 325 IPR001611 GO:0005515
Lja1g4566 1188 Pfam Leucine Rich repeat 196 209 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4566 Lja-Chr1 59731230 59735360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4566 37 1184 Receptor kinase-like Gene Family AT4G39400 68.507 0.0 1534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lja1g4566 Pkinase 7.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4566 K13415 - gmx:100499629 1785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4566 1 59731230 59735360 Lja1g4566 1 59731230 59735360 ECH