Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4561 ATGATGTTCCCGGGTTTGAACAGGGAGAGGGAGATGTCTGCCATGGTTTCAGCTTTGACCCATGTTGTCTCTGGAGATGTCCCAAGCGGTGATTACACGATTCGTCATGATTTTGGAGGAGGAAGTGTTAGACAAAACTTGCCTTCTTATTCTTCAGCTACACCCTCTTTACCTTCTTCATCTGATTATGTTGCTAGTTCTTCTCTCAAGAGGAGTAGGGAAGATGATAGATCATCCTTCATTGAATTCTCACATGGTGCTTCTTCCCCGGCTTTGCCAGCATCAACATTAACAGGGGAAATAGGAAACGCTGTATACGAATACAGAGCAACACCAACAGAGAACGTGGCCAGAGAGGACCAAGGAAGAAGAAAATACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGACCCATTCAAAGCAACCAGGGTGTGGCTTGGAACATTCGAAACCGCCGAGGCTGCCGCCAGAGCCTACGACGAAGCTGCCCTGCGTTTCAGAGGCAACAAGGCCAAACTCAACTTCCCTGAAAATGTCACTCTCCGGCAACAACTTCCGGCGACCCAATGGGGCGGCAACACCGTCGTGTCAATTCCCACGTCAACTGATCCGATTGTTCATACGGAAGCTCTTCCACATTCTCAGCCTTTAAGCAACTTGTATTTCTTCCCACAAAGGAGTCTTTATGATAATCAGAATCAGAATATTATGACAACAACATCAACAAGGGCTTCTCATCTTCAATCTTCGTCTTCACCGCCGCCACCGCGGGCTTCTTCTTCTTCTTCTTCCTCTGCCTCTTCTGCTTTTGGTTCCTCTGTGGCTTCTACGCAGGCTACTTCATTTTCTTCTTTGTATTCTAACCAGTTGCAGCCATGGTCAGCTTCTGGTCATAGCTCTTCTTCCTCCGGCTGA 933 0.478 MMFPGLNREREMSAMVSALTHVVSGDVPSGDYTIRHDFGGGSVRQNLPSYSSATPSLPSSSDYVASSSLKRSREDDRSSFIEFSHGASSPALPASTLTGEIGNAVYEYRATPTENVAREDQGRRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRQQLPATQWGGNTVVSIPTSTDPIVHTEALPHSQPLSNLYFFPQRSLYDNQNQNIMTTTSTRASHLQSSSSPPPPRASSSSSSSASSAFGSSVASTQATSFSSLYSNQLQPWSASGHSSSSSG* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4561 310 PANTHER DNA-BINDING DOMAIN 7 306 IPR044808 GO:0003700|GO:0009873
Lja1g4561 310 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Lja1g4561 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 7 306 - -
Lja1g4561 310 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Lja1g4561 310 MobiDBLite consensus disorder prediction 43 62 - -
Lja1g4561 310 MobiDBLite consensus disorder prediction 246 276 - -
Lja1g4561 310 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Lja1g4561 310 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Lja1g4561 310 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Lja1g4561 310 MobiDBLite consensus disorder prediction 44 62 - -
Lja1g4561 310 CDD AP2 125 184 IPR001471 GO:0003700|GO:0006355
Lja1g4561 310 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Lja1g4561 310 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4561 Lja-Chr1 59601641 59603383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4561 112 187 AP2-EREBP Transcription Factor Family AT5G61890 75.309 2.48e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g4561 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4561 - - gmx:100796247 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4561 1 59601641 59603383 Lja1g4561 1 59601641 59603383 ECH
Lja1g4561 1 59601641 59603383 Lja4g0641 4 5304739 5306449 ECH