Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4557 ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGAGGATAGAGACTCCAGCAAGGAGAAGAAGAACGAGAGCGGCGACAAGACCGAACGGAGCTACCGGAAGCGCGAGATCGACGACGACGCCGCCGATGACCGGAAGAGCAAGAGGTCCAGGGGAGACGACGAAAATGGCTCCAGAAAGGATAGGGATCGTGATGAACGTGACAAGGAGCGCCATAGAAGTAGCAGAGATAGGGATAGGGATAGGGATGGCGAGAGGAGTAGCAGAGACAGAGATGGTGTGAGGAGTAGCAGAGACAGAGACAGAGATAGTGTGAGGAGTAGTAGAGACAGAGACGGTGGGAGGAGTAGCAGAGATAGGGACAGAGATGGTGAGAGGAGTAGCAGAGACAGAGATAGAGACAGGGGCAGGGAGAAGGAGAAGGAGAGAGACAGGGAGAAAGATAGGGAGCGGAGAGAAAGGGACAAAGAGAAGGAGAAGGATAGGGAGAGGGAGAGAGACAGAGAGAAAAAGGAGAGGGAGAAGGAGAAAGAGAGGGAGAGAGAACGGGAGGAGAGAGAGAGGTCCAGGAGGAGCAGGAGTCATTCTGTGCGAGATAGAGAAAAAGAACGCGATTTCGAATCTAGAGATGCCAGGAGATTTAGGGATAAAAAAGATGCCGCGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCCTTAAAGGCAACCGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTCCGTCTTATCATGGATAGGAATTCCAGACGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCCGTCCCAATGGCAATTGCTCTCTCTGGGCAACTTCTTCTTGGACAACCCGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTACTGCTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTGGACCGAAAACTTTATGTTGGAAACCTTCACTTCAATATGACAGAAAGTCAGTTGAGAGAGATTTTTGAGCCATTTGGTCCCGTGGAGGTTGTACAACTGCCTCTTGACCTGGAGACTGGACATTGCAAGGGGTTTGGGTTTATTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGACATTGCTGGAAGAACTATTAAGGTTTCATCTGTAACAGATCATGTTGGAAGCCAAGACACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCGTTGCTTATGCAGAAGCTGGATCGTTCAGGCATTGCTGCAAGCATTGGTATGCCCACTGTAAATGGATCCGCTCCTGCTCAACAGGCAAGCTTGCCAATTGGTAATCCAGGAATAATACCAGTACCAACTCTCCCAACACAAATTATGCCTACCCAAGTGGCTGAACCTGTTGGTAACCCGAGCGAATGCTTACTGTTGAAGAATATGTTTGATCCAACCACAGAGACAGAACCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAATTTGGACGGGTTAAGCATATCTATGTCGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGATACGGTGGAAGCAGCAAGTGCGGCTCAACGTGCTATGCACACGAGATGGTTTGCACGCAGATTGATTTCAGCTATCTACATGCAACCTCAGGTATATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1809 0.4737 MDFDEYDYLEKTVEEQEDRDSSKEKKNESGDKTERSYRKREIDDDAADDRKSKRSRGDDENGSRKDRDRDERDKERHRSSRDRDRDRDGERSSRDRDGVRSSRDRDRDSVRSSRDRDGGRSSRDRDRDGERSSRDRDRDRGREKEKERDREKDRERRERDKEKEKDRERERDREKKEREKEKEREREREERERSRRSRSHSVRDREKERDFESRDARRFRDKKDAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSTATSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLDIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGMPTVNGSAPAQQASLPIGNPGIIPVPTLPTQIMPTQVAEPVGNPSECLLLKNMFDPTTETEPDFDLDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLQFDTVEAASAAQRAMHTRWFARRLISAIYMQPQVYEAKFKGEV* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4557 602 CDD RRM1_RBM39_like 238 310 - -
Lja1g4557 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 314 IPR000504 GO:0003723
Lja1g4557 602 Coils Coil 162 197 - -
Lja1g4557 602 CDD RRM3_RBM39_like 507 589 - -
Lja1g4557 602 SUPERFAMILY RNA-binding domain, RBD 230 318 IPR035979 GO:0003676
Lja1g4557 602 Gene3D - 504 601 IPR012677 -
Lja1g4557 602 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 99 - -
Lja1g4557 602 PANTHER CC1-LIKE SPLICING FACTOR 1 99 - -
Lja1g4557 602 MobiDBLite consensus disorder prediction 1 237 - -
Lja1g4557 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 306 IPR000504 GO:0003723
Lja1g4557 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 531 584 IPR000504 GO:0003723
Lja1g4557 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 411 IPR000504 GO:0003723
Lja1g4557 602 Gene3D - 167 323 IPR012677 -
Lja1g4557 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 417 IPR000504 GO:0003723
Lja1g4557 602 MobiDBLite consensus disorder prediction 12 236 - -
Lja1g4557 602 Gene3D - 335 431 IPR012677 -
Lja1g4557 602 PANTHER CC1-LIKE SPLICING FACTOR 97 602 - -
Lja1g4557 602 SMART rrm1_1 238 310 IPR000504 GO:0003723
Lja1g4557 602 SMART rrm1_1 340 413 IPR000504 GO:0003723
Lja1g4557 602 SMART rrm1_1 509 587 IPR000504 GO:0003723
Lja1g4557 602 TIGRFAM SF-CC1: splicing factor, CC1-like family 123 598 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lja1g4557 602 SUPERFAMILY RNA-binding domain, RBD 339 591 IPR035979 GO:0003676
Lja1g4557 602 CDD RRM2_RBM23_RBM39 341 413 - -
Lja1g4557 602 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 97 602 - -
Lja1g4557 602 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 432 526 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4557 Lja-Chr1 59539843 59546960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4557 311 412 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 2.72e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4557 K13091 - gmx:100802446 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4557 1 59539843 59546960 Lja4g0639 4 5287982 5293767 ECH
Lja1g4557 1 59539843 59546960 Lja1g4557 1 59539843 59546960 ECH
Lja4g0639 4 5287982 5293767 Lja1g4557 1 59539843 59546960 PCT