Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4546 ATGGATTTGGACGATTTCCGATCCGTATTGAAGACGGCGGGAATCGACGTGTGGACGTTCATCGACACCGCAATCGCCGTCGCTTCAACGGATTGCGCCGGCGAGCTGAGGCGTCGGAGAGACGGAATCGTCCAGCGTCTCTATTCCGCCACGTCGGCTCCTCCGCAGTGCCGGAACTGCGAGGGGAGCGGCGGCGGTTTGATTCCCAACGGAAAGCAAATCAGCAAGCGGAGCAGTCCTAGCCCCAGTCCTCAGCGCCGCGGCACGGTTTCTCCGGCGACGCCGCAGTCTCTCGGAAACGATGAGGAGAATGAGGAAGAGGTGGATCCTTATGGTGGCTTGTTCGATGATGAACAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGATCCTGAACAGACTGAAGATTATTTGGTGGAGTTGCTGCAAAATCTGGCGGATATGGATATTACATTCCAAGCGTTAAAGGATTCTGACATTGGGAGGCATGTGAATCGGTTGCGCAAGCATCCTTCCAATGAAGTTCGCCGATTGGTTAAGCTACTTGTCAGGAAGTGGAAGGAGATTGTTGATGAGTGGGTGAAGCTGAATCCACAGAAAGGAAACAACAGTTTAATGGCTGATGGAGACTCTCCTCTGCAGAAAACCACCCAAAATGGGCAGCACCATCAGATTCCAGATTTTGCGTACTCGCCAAATCCACACAATGGGAGCTCTGGGTCTGACCGCAACAACTCAGAAGCAGAACCTAAACCGAAAGTGATTCCTCGCCAAACTCCGCCAAAACCAACGCCATCACCATCAGTTACCACTCTTGCATTTACTCCTCAAAATAAGCAAAGAGAACAGAGGAATAGCAATTTTGAGGCGGAGAAGCTTGCTTCGGCAAGAAAACGGCTTCAAGAGAACTACAGAGATGCTGAAAATGCCAAAAAGCAAAGAACGATTCAGGTGATGGATATCCATGAGTTACCAAAGTCAAAATCCAAGAACACCTTCTTTGGAAAGAACAAAGGAGGAGGTAGTTCACAGGGAAGGCACTGGTGA 1050 0.499 MDLDDFRSVLKTAGIDVWTFIDTAIAVASTDCAGELRRRRDGIVQRLYSATSAPPQCRNCEGSGGGLIPNGKQISKRSSPSPSPQRRGTVSPATPQSLGNDEENEEEVDPYGGLFDDEQKKILEIKEQLEDPEQTEDYLVELLQNLADMDITFQALKDSDIGRHVNRLRKHPSNEVRRLVKLLVRKWKEIVDEWVKLNPQKGNNSLMADGDSPLQKTTQNGQHHQIPDFAYSPNPHNGSSGSDRNNSEAEPKPKVIPRQTPPKPTPSPSVTTLAFTPQNKQREQRNSNFEAEKLASARKRLQENYRDAENAKKQRTIQVMDIHELPKSKSKNTFFGKNKGGGSSQGRHW* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4546 349 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 349 - -
Lja1g4546 349 ProSiteProfiles TFIIS N-terminal domain profile. 117 194 IPR017923 -
Lja1g4546 349 MobiDBLite consensus disorder prediction 51 113 - -
Lja1g4546 349 MobiDBLite consensus disorder prediction 200 291 - -
Lja1g4546 349 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 349 IPR044790 -
Lja1g4546 349 SMART TFS2_5 122 193 IPR003617 GO:0005634
Lja1g4546 349 MobiDBLite consensus disorder prediction 269 284 - -
Lja1g4546 349 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 116 205 IPR035441 -
Lja1g4546 349 Pfam TFIIS helical bundle-like domain 142 191 IPR017923 -
Lja1g4546 349 MobiDBLite consensus disorder prediction 200 246 - -
Lja1g4546 349 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 119 204 IPR035441 -
Lja1g4546 349 MobiDBLite consensus disorder prediction 72 99 - -
Lja1g4546 349 Coils Coil 291 318 - -
Lja1g4546 349 MobiDBLite consensus disorder prediction 328 349 - -
Lja1g4546 349 CDD TFIIS_I 119 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4546 Lja-Chr1 59388209 59391264 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lja1g4546 Med26 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4546 - - aip:107622503 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4546 1 59388209 59391264 Lja1g4546 1 59388209 59391264 ECH
Lja1g4546 1 59388209 59391264 Lja4g0634 4 5229309 5233173 ECH
Lja4g0634 4 5229309 5233173 Lja1g4546 1 59388209 59391264 PCT