Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4545 ATGAGGCACCTTCTCCTCCTCCGGAGAAAACCCTTCTTCTTCCCTCCGTCATGTTCACCTGGCGCGCTTCTCATTCGGCTCCAACTATGCGAATTCTCATCAACTCCTTCTTCTGCTCCTTCTCATCACCAACCTCACTGGCGGCGTCAAGAGGAGGAGTCTCGCAATGTTAGGGTTTCCGTCTGGTGGGATTTCGAGAACTGCAATGTCCCCAATGGTGTCAACATTTCCAAAGTCGCCCCTGCTGTCACTGAAGCTATTAGGGCCAATGGGATCAAAGGTCCTGTTCATATCACCGCTTTCGGCGATGTTCTTCAGCTTTCTAGGGCTAACCAGGAAGCGCTTGTTTATACCGGGATTCATCTCACTCACATTCCCAATGGTGGAAAGAATAGTGCCGATAGATCTCTTCTTATTGATCTTATGTATTGGGTTTCCCAAAATCCTCCACCTGCACATCTCTTTCTGATATCTGGTGATAAAGACTTTGCTGGCATATTGCACCGGTTAAGAATGAATAACTACAATATCTTGCTTGCAAGTCCTGGAAAGGCTTCTGACGTTCTCTGTAGTGCAGCAACAATAATGTGGCATTGGTCTTCATTGCTCAAGGGAGAAGATCTTATTGGAAAACATTTCAACCATCCTCCTGATGGTCTGTTTGGTTCTTGGTATGGAAACTCTAAGGCGCCTCTTCAAAACCCCTTCTCAGCTGCTGAGCAATCTACATCTTTACAAAATGCGGAGATCCACAAACCTTCCTCAGACGTAAAGTTGGGTCCAATTCCAAATTCAGTTGTAAAGAAGGTTAGGCATATATTGAATTCACATCCAAACGGAATATCCATTACAGATCTTCGTGCAGAGTTGACAAAAAATCATGTGCACTTGGATAAAAACTTATATGGATACAAAAAGTTTTCTCAGTTTCTATTAGCAATTCCACATATAGGTGATGGTAATTTTTTGGTACGTTTGGTCTCTTCAGAATCCCCTGCACCCTGTGAGAGCATTAATCTACCATCAACAACATCTGCTGTTAAGAATGATGAGAGGGGCTATGCAGCAACCACAGTGCTAAATGGTGAGGGTAAGAATAGGGATAGATATGCACATGTGCCATTGTACGAAAGGGGTATGGAGGATGATTCAAAATCATTACACCCTGTCTCTTCACAAGGCAAACCTATTCGGGAATATATAGAAGAGAAATCATCATCTCCTTCATTCGTTGAAAGACATGTCCTCCAGCCCCTTTATGAGTTGCCGAAATCACCATCTCTTGGTAGTAAGAAGGTTGTGGATGTGGCTAATGCACCATTATCAGATATTCAGCTACCTCCAAATGATAGTGAAGTTTCCAAAACTAAGACGGGTTTCTTTAATAGATCTAAAACGTTGCCTGATAATGCCACTGTTAGGTCTGAGGATGCAAGTCCCAAAATACTGGAAAAATATACAATTTCAGGGAATCACTCTGCTGGGGATAATCATACAACGTTGGAAAACAATGATGTTGGAAATCATGAAGCTGGAAAATTTAAAGCAATGAGCGAATATGAGAATCCAACTAGAAAGGAGGTTGATGAAGTTTGTCGCTCATATTCTTCACCAGCAGTAGATGACTCTCAGGTTGAGAAAATACCTGATGGAAGTGCTGAAACTTATAGAAAAAGTTCAACTTTCTTTAGCTGGATTAGAAGTTGGTGGCCATTTGGGAAAAACAGTGCAGACTCTGATGATTTGACTGCTAATCAGGACAAGGTGGTTAGTAATTCTGAGGATCTTGAAGAGACCAAGCCATCAGATCCGGACCACGATGTTATTCAATCAGGAAAGCCTGAGTTATTTTCTAGTGGTTCCTTTTGGAGTGACATGGAATCTTTTGTTTTCATGCCCAAAGGATCACTTCTTCTTTCCCAGTCAAAAAGCAGGGAGGATCTGGCTCATAAATTACAAAAGCATGGACCTGTGGTTCTTAGATCTCTCAATGAAAAAGAGATCTTTCAATTGGTGGAATTGTTAATAGCAGAGAAAAAATGGCTGGAGGAAAGCCCCTCCCAAGCATTATTTCCTTTTAGGCTAACTCAACCAGTTCAGAAAAGCTCATCCGGGGGTTGTCAATCTCATGGTGCAAATGGTTTGAGATCCCTCTTCCTAAGTAAAACATCACAGTCTAACTTGCCAAAATCATCTGAACATGATATTGATAAACACAATCAGATCATTCATCAGACTAGAGTATCCATGTCGGCCAATGAAAATAAATATACTGAGAGGTCTAGAGATGATATATTGGTAGACTGTCAGAAACTTGTGAGGGAGATATTGAGGCAATACCCAGAGGGATATAACATTGGTTCTTTTCGAAAACTATTTGTTACAAGGTATGGCTATCATCTAGATATACAGAAGCTTGGCTATAAGAAGATGGCATCCTTATTACAGATAATGCCTGAGGTGAAATTAGAGTCCACTTACATTTATCCTGCTGTTCCTGCTGTTGATGCTTCTGACACAGAAACTTCTATCCTCAAAAGTCAACTAACCGATGCTAGTCTTGCAAGCTCCAACTCAGATAATGAATTAGATGATTCAGCCCCAAAAGGTGATAACACGGAATGTCAATGGGAGGAATTAGGTCCAGTTTCTACAACTAATTCCAACCAGAATGATAAAGAATCAAATTTGAGTCAGAAAGCCAAAAAACGGGATACATTAAAGAATTTTTATTATGAACCTGTAGACTCAGACTATGATTCTTCTGATTCTGGAGGGGACATCTGTTTAACTCAACCAAAGCCAAAATGTAATGAGCTAGACAGTTCTATTTGGCATGTTCTGGATTCGTGGGAAGCCAGCAAGAAAGGAGAAAATAGTGTGAAGAAGTCAGACACTGTTGACGTATTGGGCAATTCTCTGGCCGATATCTTGAAGTCATCCACTGAATCGACAAAGGACCTTCCCAAAATTCCTTCGGGAAATTCCAGAGAGAATCAAAGATCTCAAACGAACTATTCATTTGTTGCTGACCCAGTCATATCTGACAAGGACAAGCTGATAGGCGGCTTATTAGATGGCTTCAAGAAAGCAGATGAACCAAAAATGCAGAACTGA 3117 0.4119 MRHLLLLRRKPFFFPPSCSPGALLIRLQLCEFSSTPSSAPSHHQPHWRRQEEESRNVRVSVWWDFENCNVPNGVNISKVAPAVTEAIRANGIKGPVHITAFGDVLQLSRANQEALVYTGIHLTHIPNGGKNSADRSLLIDLMYWVSQNPPPAHLFLISGDKDFAGILHRLRMNNYNILLASPGKASDVLCSAATIMWHWSSLLKGEDLIGKHFNHPPDGLFGSWYGNSKAPLQNPFSAAEQSTSLQNAEIHKPSSDVKLGPIPNSVVKKVRHILNSHPNGISITDLRAELTKNHVHLDKNLYGYKKFSQFLLAIPHIGDGNFLVRLVSSESPAPCESINLPSTTSAVKNDERGYAATTVLNGEGKNRDRYAHVPLYERGMEDDSKSLHPVSSQGKPIREYIEEKSSSPSFVERHVLQPLYELPKSPSLGSKKVVDVANAPLSDIQLPPNDSEVSKTKTGFFNRSKTLPDNATVRSEDASPKILEKYTISGNHSAGDNHTTLENNDVGNHEAGKFKAMSEYENPTRKEVDEVCRSYSSPAVDDSQVEKIPDGSAETYRKSSTFFSWIRSWWPFGKNSADSDDLTANQDKVVSNSEDLEETKPSDPDHDVIQSGKPELFSSGSFWSDMESFVFMPKGSLLLSQSKSREDLAHKLQKHGPVVLRSLNEKEIFQLVELLIAEKKWLEESPSQALFPFRLTQPVQKSSSGGCQSHGANGLRSLFLSKTSQSNLPKSSEHDIDKHNQIIHQTRVSMSANENKYTERSRDDILVDCQKLVREILRQYPEGYNIGSFRKLFVTRYGYHLDIQKLGYKKMASLLQIMPEVKLESTYIYPAVPAVDASDTETSILKSQLTDASLASSNSDNELDDSAPKGDNTECQWEELGPVSTTNSNQNDKESNLSQKAKKRDTLKNFYYEPVDSDYDSSDSGGDICLTQPKPKCNELDSSIWHVLDSWEASKKGENSVKKSDTVDVLGNSLADILKSSTESTKDLPKIPSGNSRENQRSQTNYSFVADPVISDKDKLIGGLLDGFKKADEPKMQN* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4545 1038 MobiDBLite consensus disorder prediction 878 895 - -
Lja1g4545 1038 MobiDBLite consensus disorder prediction 981 1009 - -
Lja1g4545 1038 MobiDBLite consensus disorder prediction 490 506 - -
Lja1g4545 1038 Gene3D - 760 828 IPR041966 -
Lja1g4545 1038 PANTHER LIMKAIN B LKAP 7 975 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lja1g4545 1038 Pfam OST-HTH/LOTUS domain 769 824 IPR025605 -
Lja1g4545 1038 Pfam OST-HTH/LOTUS domain 265 316 IPR025605 -
Lja1g4545 1038 Gene3D - 50 201 - -
Lja1g4545 1038 MobiDBLite consensus disorder prediction 591 611 - -
Lja1g4545 1038 MobiDBLite consensus disorder prediction 855 901 - -
Lja1g4545 1038 MobiDBLite consensus disorder prediction 489 508 - -
Lja1g4545 1038 Pfam NYN domain 58 194 IPR021139 GO:0004540
Lja1g4545 1038 PANTHER EMB|CAB71880.1 7 975 - -
Lja1g4545 1038 CDD PIN_limkain_b1_N_like 58 182 - -
Lja1g4545 1038 CDD LOTUS 768 821 - -
Lja1g4545 1038 Gene3D - 263 327 IPR041966 -
Lja1g4545 1038 ProSiteProfiles OST-type HTH domain profile. 262 341 IPR025605 -
Lja1g4545 1038 CDD LOTUS 263 317 - -
Lja1g4545 1038 MobiDBLite consensus disorder prediction 591 610 - -
Lja1g4545 1038 ProSiteProfiles OST-type HTH domain profile. 765 839 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4545 Lja-Chr1 59377112 59382756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4545 57 205 C2H2 Transcription Factor Family AT5G61190 45.638 2.97e-37 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4545 - - aprc:113850520 1143.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4545 1 59377112 59382756 Lja1g4545 1 59377112 59382756 ECH