Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4543 ATGAAGAGGAAGAGCACGAGGATGACGAAGAGGAATGTGCTTACCTTAACAGCTGATGAGATACGAGCTTTAACGTTTTGCAGTGAGTCTAATGCATACACATTTTACTGTGCCTACGCGAAGGGAAAGGGATTTGTGGTTAGAAAAGATGCATGTGAACGAGATTCTAATAACAAAGTTGTAATGCGAAAATTTGTATGCAATAGGGAGGGGTTAAGGGAACCAAAGTACTTCATTATGGATAGGCAAAGAGCCCACAGAAGCCTAACCCGCACTAACTGTCAAGCAAGACTCAGGATACGGTACAATAACAAGAAATGCCAATGGGGTGTGGTGGGGTTTGAGGAGAAACACAACCACGAACTTACCCCGTCGGTATATGTCCCTGTGATTAATGCTTACCGTACAATTAGTGAAGGAGACAAAGCTCAGGCAGAAAGTCTTCACGCATATGGTGTCAGAACCTGTCATATCATGGGTTATTTGACGGCACAGAAGGGGGGATATTCTAAAGTAGGATTCTTGAAAGAAGATCTGTACAACTACTTCAGTCGCCAGAGACATAACAGAGTCAAAGGTGGGGATGCTCGAGCTGCTCTAACTTACCTAACATCAAAGGCTGATGCAGATCCCATGTTCTATTCGAAATACACCACCTCAGGAGACAATAGATTGAATAATCTTTTTTGGGCAGATGGTGTTAGCAGGACAGATTACCAATGCTTCGGGGATGTTCTTGCCTTTGACTCCACTTACGGCTCCACTAAGTATAAACATCCACTGGTTATATTTTGTGGAACTAACCATCATGACCAAACGGTTATATTTGGATGCGCTTTATTGATTGATGAGACTATTGAGACATACAAGTGGTTGTTGGAAACTTTTTTGGAAGCAATGAGTGGGAAACAACCTAAATCTGTTGTAACCGACAGAGATCTTTCTATGAGGGAGGCCATCAAACAAGTATTCCCGAACGCATCGCATCGACTATGTGCATGGCACTTGCACAAGAACGCAAAGGATCACAGAATGAGCAAGGAATTTTTGGATGACTTTCAGAAAGCACTTTATTGGCACTTCAGTGTTGAGGAATTTGAGGAACACTGGCAGAACATGGTTTCTAAGCACGGCCTACAGAAAGACAAGTGGGTTTTAAGTGTGTATGAGAAAAAGGAATCGTGGTGCTCCGCATATCTCCGTGATCAGTTTTTTGCTGGGATACGGACAACATCAATATGTGAAGCCATAAATAGTCGTATCAAGGTCTATGTCAAGAGAAGAATTAGTCTTATAGACTTCATGCAAACCATTGAGCATGCTTTAAGAGGGTACAGATTTAATGAGTTGCGAGCTGATTACGGTAGTATTTACACTGAACCTGTTTTGACTACCACTCTGTACAAATTTGAAAGTGAAGCTGCAAAACTGTACACGCGTGAAATTTTTAAAGAAGTAAGAAATCAAATTGAGCGTGTGGCTCCATTGAATTATAAAGATAAAACAGCGGATGGAGATGAAGTGAGGTACGAAATGTTCCATTATAGGAGGCCAGAAAGAACCATTGAAGTAGTCTACAACAAGAAAAGTAATCAATTTTACTGTCCATGCCGGCTATTTGAATCACGTGGAATACCATGTTCACATATTTTCAACAGCATGAAATATGAGCTCATGGAAACCATTCCTAAAACACTTATGCTTAGCAGGTGGGGACGGTATGCAAAATCTGAATACTTGTCGGCAACATCCACCGATGAGGTGGACAGTTCTGTAATGAAGACAACACGATTTGGGGCTATATCTGCTGCGTTGACGACGAAGTATAAGAATAAGATACTCAAACAAGGCGGACATGTCAACGGGACCAACGACATTCGTGATCCCAATATCGTCAAATCTAAAGGACGCCAACCTGCAACCCTGAAACCAAAGAAGAATAAAAAGAATAAGAAACAAGCAAGGTGTTCAAACTGTCATAAGCTTGGTCACAACGCAAGGACTTGTTCTACCCTCGTTGGTGGAGAAGATAATGATTTGGAGGGTGATGAGCGATCCACGCAGGAGGATGAGGGCAACGTAAATGACGATAGCACGGGCCAGCCAACCGAGGCCACGACGCAGCCAAGTAGATCCAATTCTAATGTAATAAACCATTTGGTTGGTCGTCGAGGACATAAAGCCAAGAAACAAAAGACAAAGAACTCGAATCTCTGTTCAGTTAATGAAAAGGAAAACCTAACCCCCGCAACTGATAAAGATGAAAGTCAGATGGGCTCACGTGCTTTATCCCCACAAAATTCAACAATGCAACCGCCAACCCAGACAGCTGCTTCTTGTGGTATAGCTCATCCCGGATTTCATTACGCTGTCCCTCAATATCCAACACGACCACCTAACTTAGCCGTTGGTACGGGTATGCCAGCCCAGGTCAACTTCCCACATGGTTATGGTGGATGGATGCCAGACCCCAACATTCAATATGCTTATGGTCAACCCATAAATGGTCCTCAAAATGCTCCTCAATGCTATGGTTATGTTCCGATATTGCCCCAAAACTATCAGAATCTATCTGCTTGTCAACCTATTCATACTCCTGCTGTTAGAGGACATAGCCAACACCAAGGCCCCCGTAGCCAAATGCAACATGATGCGGCGAAGAAAAAGGCTGGTACATAA 2679 0.4296 MKRKSTRMTKRNVLTLTADEIRALTFCSESNAYTFYCAYAKGKGFVVRKDACERDSNNKVVMRKFVCNREGLREPKYFIMDRQRAHRSLTRTNCQARLRIRYNNKKCQWGVVGFEEKHNHELTPSVYVPVINAYRTISEGDKAQAESLHAYGVRTCHIMGYLTAQKGGYSKVGFLKEDLYNYFSRQRHNRVKGGDARAALTYLTSKADADPMFYSKYTTSGDNRLNNLFWADGVSRTDYQCFGDVLAFDSTYGSTKYKHPLVIFCGTNHHDQTVIFGCALLIDETIETYKWLLETFLEAMSGKQPKSVVTDRDLSMREAIKQVFPNASHRLCAWHLHKNAKDHRMSKEFLDDFQKALYWHFSVEEFEEHWQNMVSKHGLQKDKWVLSVYEKKESWCSAYLRDQFFAGIRTTSICEAINSRIKVYVKRRISLIDFMQTIEHALRGYRFNELRADYGSIYTEPVLTTTLYKFESEAAKLYTREIFKEVRNQIERVAPLNYKDKTADGDEVRYEMFHYRRPERTIEVVYNKKSNQFYCPCRLFESRGIPCSHIFNSMKYELMETIPKTLMLSRWGRYAKSEYLSATSTDEVDSSVMKTTRFGAISAALTTKYKNKILKQGGHVNGTNDIRDPNIVKSKGRQPATLKPKKNKKNKKQARCSNCHKLGHNARTCSTLVGGEDNDLEGDERSTQEDEGNVNDDSTGQPTEATTQPSRSNSNVINHLVGRRGHKAKKQKTKNSNLCSVNEKENLTPATDKDESQMGSRALSPQNSTMQPPTQTAASCGIAHPGFHYAVPQYPTRPPNLAVGTGMPAQVNFPHGYGGWMPDPNIQYAYGQPINGPQNAPQCYGYVPILPQNYQNLSACQPIHTPAVRGHSQHQGPRSQMQHDAAKKKAGT* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4543 892 MobiDBLite consensus disorder prediction 639 655 - -
Lja1g4543 892 Pfam FAR1 DNA-binding domain 34 123 IPR004330 -
Lja1g4543 892 MobiDBLite consensus disorder prediction 616 655 - -
Lja1g4543 892 MobiDBLite consensus disorder prediction 867 892 - -
Lja1g4543 892 ProSiteProfiles Zinc finger SWIM-type profile. 520 558 IPR007527 GO:0008270
Lja1g4543 892 SUPERFAMILY Retrovirus zinc finger-like domains 640 674 IPR036875 GO:0003676|GO:0008270
Lja1g4543 892 MobiDBLite consensus disorder prediction 693 719 - -
Lja1g4543 892 MobiDBLite consensus disorder prediction 670 779 - -
Lja1g4543 892 MobiDBLite consensus disorder prediction 734 778 - -
Lja1g4543 892 PANTHER OS02G0262500 PROTEIN 18 594 - -
Lja1g4543 892 Pfam MULE transposase domain 245 339 IPR018289 -
Lja1g4543 892 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 18 594 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4543 Lja-Chr1 59363172 59366368 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g4543 MULE 1.2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4543 - - ccaj:109792835 727.628