Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4542 ATGAAAGGAAGCAAGCCCTATCTGGTTGTGATTGCCATCCAAGCTATATATGCTGCCATGTTTCTGCTCTCAAAAGCTGCATTCGACCATGGCATGAACAATTTCATCTTCACCTTCTACAGACAGGCACTAGCAACCCTTTTCTTGATCCCGTTCGCTTTGTTCTTCGAATGGAAACATGCACTGCCTTTGCCTTTTCGGACCTTCTGCAAGATTTTCTTCCTATCTTTATGTGGGATTACTTTAAGCCTGGATGTTTATGGTGTTGGTCTTATTTACACCTCTGCAACTTTGGCTGCTGCTACTACAAACTGTCTTCCAGCTATCACCTTCTTTCTGGCGCTCCTACTAAGGAGAGAGAGATTGAAAGTAAAGACCATCCCTGGAATTGCTAAGTTAATAGGCATTTTAGCATGCTTGGGTGGTGCAGCAATCCTTGCCTTTTATAAAGGTCCTCACTTTAAATTTTTAAGCCACCGTCCCCTCCTGGGAAACCATAAAAGCCAACAACATCAAGGTCATAATGCTCTCTCTGCCTCTGGTACATGGATAAAGGGTTGCTTCCTCATTCTCCTCTCCAACACATTTTGGGGGTTGTGGCTTGTGCTACAGGCTTTTGTTATAAAAAGTTACCCTTCAAAGCTTATCTTCACAACCCTTCAGTGTTTCTTAAGCTCAATTCAGTCTCTAGTGATTGCCTTGGCCATAGAAAGGGATATTGAGCAATGGAAATTGGGTTGGAATGTCAGGCTCCTCGCTGTAGTATACTGTGGAGTTATGGTTACTGGTGTGGGCTTTTACTTGCAGACTTGGGTTATAGAAAAGAAAGGACCAGTGTTTCTCGCAATGTCAATGCCATTGGCTCTGATTATTACAATCATTTCCTCTGCAATTGTCTTGGGCGAGATAATAAGTTTGGGAAGCATTTTAGGTGGGTTGGTAATGGTTCTAGGATTGTACAGTGTGCTGTGGGGAAAAAGCAGGGAGCAAATCTTAAAAGTCTCGCTGGATTTGGAGCAATCATCAGGTTAA 1032 0.4302 MKGSKPYLVVIAIQAIYAAMFLLSKAAFDHGMNNFIFTFYRQALATLFLIPFALFFEWKHALPLPFRTFCKIFFLSLCGITLSLDVYGVGLIYTSATLAAATTNCLPAITFFLALLLRRERLKVKTIPGIAKLIGILACLGGAAILAFYKGPHFKFLSHRPLLGNHKSQQHQGHNALSASGTWIKGCFLILLSNTFWGLWLVLQAFVIKSYPSKLIFTTLQCFLSSIQSLVIALAIERDIEQWKLGWNVRLLAVVYCGVMVTGVGFYLQTWVIEKKGPVFLAMSMPLALIITIISSAIVLGEIISLGSILGGLVMVLGLYSVLWGKSREQILKVSLDLEQSSG* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4542 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 151 - -
Lja1g4542 343 PANTHER WAT1-RELATED PROTEIN 5 334 - -
Lja1g4542 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 328 - -
Lja1g4542 343 PANTHER WAT1-RELATED PROTEIN 5 334 IPR030184 GO:0016021|GO:0022857
Lja1g4542 343 Pfam EamA-like transporter family 5 132 IPR000620 GO:0016020|GO:0016021
Lja1g4542 343 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4542 Lja-Chr1 59320415 59325768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4542 1 257 Nodulin-like Gene Family AT5G64700 62.162 4.40e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4542 - - gmx:100804562 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4542 1 59320415 59325768 Lja1g4542 1 59320415 59325768 ECH
Lja1g4542 1 59320415 59325768 Lja4g0633 4 5206305 5220973 ECH
Lja4g0633 4 5206305 5220973 Lja1g4542 1 59320415 59325768 PCT