Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4539 ATGCTGGGAATCTCATCTTTACCGGAAACTCCCATCCAGACCCCGCCGCCGCACCTCGTGCAGGAGGTTGCTGCTGCTTCCGCCGTCGCCGCCGCCACTGATGGAGGACCACTCTCCGATGGGTTCAAAACGGAGCACGGCGAGGATGGAGACCGCAGTTCCGGCGCCAACCGGTGGCCTCGGGAGGAGACAATGGCTCTGCTCAGGATAAGGTCTGAAATGGACGTTGCCTTCAGAGATACAAGCCCTAAAGCCCCTCTTTGGGAACAAGTCTCAAGGAAATTAGCTGAGCTAGGGTATCATAGGAGTGCTAAGAAGTGCAGGGAAAAATTTGAGAACATCTACAAGTACCATAGGAGGACTAAAGAAGGCCGTTTTGGCCGAGCCAACAACAGCGGCAAGACCTATCGATTTTTCGAGCAATTGGAAGCTTTAGAGGGCAACCTGGTTCATCCTCCTTCTTCCTCTGAAGGACAACAACATCATGTTCAACTTCAACCGGACAGCAATGTTGATGTGATTCAAGATGCGGTGCCTTGTTCGTTTAGATTCCCCGGTGCAAATGTGGTGGAGTATTCGAGCTCGGCTACTTGCTCTTCCGGGGAAGGTGGTGAGAAGGGGAAGAAGAAGAGGAAGCTGACGAGGTTTTTCGAGGGGCTGATGAGGGAGGTGATAGAGAGGCAAGAAACGCTGCAGAGGAAGTTCATGGAGGTGCTTGACAAGTGCGAGATGGAGCGAGTAGCGAGGGAGGAAGCGTGGAAGGTTGAAGAGTTGGCGAGGATTCAGAGGGAGCGTGAGGTTCTGGCTCAGGAAAGGGCAATCTCTGCTGCAAAAGATGAAGCCGTGCTTGCCCTTTTGAAAAAGATCACAGAAAACTCTGCAGATGGCACGGTGCAATTACCAGAGAAATTTTATGTTATTCCTGATGAAAATGCTAATGGGAATGTGAATGGAGAGGGAGAGAAGCAGCATCAAGAGGGTGGAAATGCTAATGTTGGTGTTAATGTTGGGAGTTTCATACACATGAGCTCATCAAGATGGCCCAAAGAAGAAGTGGAGGCTTTGATACGGTTGAGGACACAGCTTGATGTGCAGTCACAAGGGAATAATAATGGATCCAATTCCAAGGGACCTCTTTGGGAGGAGATTTCTTCAGCTATGAAGAGCATTGGCTATGATCGCAGTGCCAAGAGGTGCAAGGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAGCCTACGGATTCCAAAACTTGTCCTTATTATCACCATCTTGAAGCTTTGTACAGCAAAAAGCCTAAGAAGGTGGACGATTCAGGTAGTTCAGGTAATGAGTTGAAGCCCGAGGAGCTTTTGATGCACATTATGGGGAGTCATGGAGAGAGGCAACAGTTAGAGTCTTCATCCGAAGATGGTGATAGAGAGAACATGGAACAGAACCAGGGTGATAATGATGAAGATCAAGATGAGTATCAAATGGTTGATAATAGTCCTTCCACAGGAATCATGAGTTGA 1539 0.486 MLGISSLPETPIQTPPPHLVQEVAAASAVAAATDGGPLSDGFKTEHGEDGDRSSGANRWPREETMALLRIRSEMDVAFRDTSPKAPLWEQVSRKLAELGYHRSAKKCREKFENIYKYHRRTKEGRFGRANNSGKTYRFFEQLEALEGNLVHPPSSSEGQQHHVQLQPDSNVDVIQDAVPCSFRFPGANVVEYSSSATCSSGEGGEKGKKKRKLTRFFEGLMREVIERQETLQRKFMEVLDKCEMERVAREEAWKVEELARIQREREVLAQERAISAAKDEAVLALLKKITENSADGTVQLPEKFYVIPDENANGNVNGEGEKQHQEGGNANVGVNVGSFIHMSSSRWPKEEVEALIRLRTQLDVQSQGNNNGSNSKGPLWEEISSAMKSIGYDRSAKRCKEKWENINKYFKRMKEKNKRKPTDSKTCPYYHHLEALYSKKPKKVDDSGSSGNELKPEELLMHIMGSHGERQQLESSSEDGDRENMEQNQGDNDEDQDEYQMVDNSPSTGIMS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4539 512 Gene3D - 59 120 - -
Lja1g4539 512 Gene3D - 347 412 - -
Lja1g4539 512 MobiDBLite consensus disorder prediction 472 489 - -
Lja1g4539 512 MobiDBLite consensus disorder prediction 41 60 - -
Lja1g4539 512 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 25 508 - -
Lja1g4539 512 SMART sant 55 117 IPR001005 -
Lja1g4539 512 SMART sant 343 409 IPR001005 -
Lja1g4539 512 MobiDBLite consensus disorder prediction 440 512 - -
Lja1g4539 512 CDD GT1 57 122 - -
Lja1g4539 512 ProSiteProfiles Myb-like domain profile. 57 115 IPR001005 -
Lja1g4539 512 Pfam Myb/SANT-like DNA-binding domain 345 436 IPR044822 -
Lja1g4539 512 Pfam Myb/SANT-like DNA-binding domain 57 145 IPR044822 -
Lja1g4539 512 ProSiteProfiles Myb-like domain profile. 345 407 IPR001005 -
Lja1g4539 512 SUPERFAMILY Homeodomain-like 344 424 IPR009057 -
Lja1g4539 512 MobiDBLite consensus disorder prediction 26 60 - -
Lja1g4539 512 CDD GT1 345 414 - -
Lja1g4539 512 PANTHER - 25 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4539 Lja-Chr1 59302942 59305413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4539 51 442 Trihelix Transcription Factor Family AT1G76880 44.060 4.00e-114 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja1g4539 Myb_DNA-bind_4 1.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4539 - - gmx:100805632 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4539 1 59302942 59305413 Lja1g4539 1 59302942 59305413 ECH