Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4536 ATGGCTGCCATGAACTCTAGCGTGTTGGCTTGTGGCTATGCCATATCTGGTGCAGGATGTTCTGAGCTCAATTCAAAGCTCACCTCCATGCCCTCTTTGACTGTCTCTGGCTCCAAGTTGCCCGTGATCAAGGCCCGCCAGGCCCGAGTTCCTGAGCCCAAAGCATGTGATGGAAGGAGAACTGCCCTTGCTCTCTTGGCAGCCACCCTTTTCAGCACTGCAGTCTCCAATTCCTCTGCCAATGCTGGTGTCATTGAAGAATACCTTGAGAAGAGCAAGGCCAACAAGGAATTGAATGACAAGAAAAGGTTAGCTACTAGTGGGGCAAACTTTGCTAGAGCATACACAGTTCAATTTGGAACTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGAAAGTGCCATTCATATCTGAGGATTTGGAGCTTGAATGTGAAGGAAAGGACAAGTACAAGTGTGGTTCAAATGTTTTCTGGAAATGGTGA 504 0.4762 MAAMNSSVLACGYAISGAGCSELNSKLTSMPSLTVSGSKLPVIKARQARVPEPKACDGRRTALALLAATLFSTAVSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLELECEGKDKYKCGSNVFWKW* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4536 167 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 43 167 IPR008796 GO:0009522|GO:0015979
Lja1g4536 167 Gene3D - 83 167 IPR044907 -
Lja1g4536 167 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 167 IPR008796 GO:0009522|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4536 Lja-Chr1 59270818 59272478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4536 1 138 Calmodulin-binding Proteins AT5G64040 66.901 6.01e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4536 K02701 - qsu:111999108 270.011