Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja1g4535 | ATGGATTCTTCTACTTCCTTCACTTCACCACTCTTACATGACCTTCTTGAAGGATTCCACTCAAGAAGATTGCTCCTTCAAGCAAACCCCCCAGCTTCAACAATCAGCCATGATTCAGAAAAAGCATATCTTGGGGATGGTAATTTTGATGCAAATGTTATTATGGTCCTCTCAGTCCTGTTGTGTGCTCTTATTTGCTCGCTGGGTTTGAACTCCATCATAAGGTGTGCACTAAGATGTTCCAATTTAGTTGTCATAGGTGACTCAGTTACCAACTCTCCAACTAGAGCAGCAAACACTGGAGTCAAGAAGAAAGCTCTCAAGACTTTCCCTGTAGTAAGTTACTCTGCTGAACTGAATTTGCCAAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAGAGTTCACCAATGGTGAAAAGGTGAGGATTTTGCCTAAGTGTAACCACGGGTTCCATGTGAGATGCATTGACAAGTGGCTAAGCTCACACTCATCATGCCCCAAGTGCAGACAGTGCCTTATTGAGACTTGTGAGAAGATTGTTGGGGCTACTACCTCATCATCTCAACCTCAACTTTCTGTTGTTGTGGTCACACCAAACCTTCTGGATCCGGTGCTACTAGAAACAGTTGTGACCATAGCACCACTCGAGCCGGAGGGCATGGTGCGTAGCTACAGGGGAATTAGCTAG | 690 | 0.4478 | MDSSTSFTSPLLHDLLEGFHSRRLLLQANPPASTISHDSEKAYLGDGNFDANVIMVLSVLLCALICSLGLNSIIRCALRCSNLVVIGDSVTNSPTRAANTGVKKKALKTFPVVSYSAELNLPSLDSECVICLSEFTNGEKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCEKIVGATTSSSQPQLSVVVVTPNLLDPVLLETVVTIAPLEPEGMVRSYRGIS* | 230 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja1g4535 | 229 | SMART | ring_2 | 128 | 169 | IPR001841 | - | |
Lja1g4535 | 229 | Pfam | Ring finger domain | 127 | 170 | IPR001841 | - | |
Lja1g4535 | 229 | SUPERFAMILY | RING/U-box | 106 | 175 | - | - | |
Lja1g4535 | 229 | ProSiteProfiles | Zinc finger RING-type profile. | 128 | 170 | IPR001841 | - | |
Lja1g4535 | 229 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 174 | IPR013083 | - | |
Lja1g4535 | 229 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 1 | 227 | - | - | |
Lja1g4535 | 229 | CDD | RING-H2_PA-TM-RING | 127 | 170 | - | - | |
Lja1g4535 | 229 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 1 | 227 | IPR044602 | GO:0016567|GO:0016740 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja1g4535 | Lja-Chr1 | 59243096 | 59244133 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja1g4535 | 23 | 174 | C3H Transcription Factor Family | AT3G10910 | 50.311 | 2.44e-47 | 152 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja1g4535 | K19040 | - | gmx:100787934 | 314.309 |