Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4535 ATGGATTCTTCTACTTCCTTCACTTCACCACTCTTACATGACCTTCTTGAAGGATTCCACTCAAGAAGATTGCTCCTTCAAGCAAACCCCCCAGCTTCAACAATCAGCCATGATTCAGAAAAAGCATATCTTGGGGATGGTAATTTTGATGCAAATGTTATTATGGTCCTCTCAGTCCTGTTGTGTGCTCTTATTTGCTCGCTGGGTTTGAACTCCATCATAAGGTGTGCACTAAGATGTTCCAATTTAGTTGTCATAGGTGACTCAGTTACCAACTCTCCAACTAGAGCAGCAAACACTGGAGTCAAGAAGAAAGCTCTCAAGACTTTCCCTGTAGTAAGTTACTCTGCTGAACTGAATTTGCCAAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAGAGTTCACCAATGGTGAAAAGGTGAGGATTTTGCCTAAGTGTAACCACGGGTTCCATGTGAGATGCATTGACAAGTGGCTAAGCTCACACTCATCATGCCCCAAGTGCAGACAGTGCCTTATTGAGACTTGTGAGAAGATTGTTGGGGCTACTACCTCATCATCTCAACCTCAACTTTCTGTTGTTGTGGTCACACCAAACCTTCTGGATCCGGTGCTACTAGAAACAGTTGTGACCATAGCACCACTCGAGCCGGAGGGCATGGTGCGTAGCTACAGGGGAATTAGCTAG 690 0.4478 MDSSTSFTSPLLHDLLEGFHSRRLLLQANPPASTISHDSEKAYLGDGNFDANVIMVLSVLLCALICSLGLNSIIRCALRCSNLVVIGDSVTNSPTRAANTGVKKKALKTFPVVSYSAELNLPSLDSECVICLSEFTNGEKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCEKIVGATTSSSQPQLSVVVVTPNLLDPVLLETVVTIAPLEPEGMVRSYRGIS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4535 229 SMART ring_2 128 169 IPR001841 -
Lja1g4535 229 Pfam Ring finger domain 127 170 IPR001841 -
Lja1g4535 229 SUPERFAMILY RING/U-box 106 175 - -
Lja1g4535 229 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Lja1g4535 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 174 IPR013083 -
Lja1g4535 229 PANTHER RING-H2 FINGER PROTEIN ATL78 1 227 - -
Lja1g4535 229 CDD RING-H2_PA-TM-RING 127 170 - -
Lja1g4535 229 PANTHER RING-H2 FINGER PROTEIN ATL78 1 227 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4535 Lja-Chr1 59243096 59244133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4535 23 174 C3H Transcription Factor Family AT3G10910 50.311 2.44e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4535 K19040 - gmx:100787934 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0624 4 5167278 5168233 Lja1g4535 1 59243096 59244133 PCT