Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4530 ATGACTAACCGTAAGATTACTCAAGCACAATTGAAGAAAATTGGAGTGAAAAGTCAAGCTGTGACAAATGGGAGTGAAGCTGTAGAACTTCATTGCAATGGTCAACATTTTGACTTAATTATAATGGATAGGGATATGCCTATTATGAATGGAGTTGAGGCAACCAAGCAGCTTCGTTCAATGGGAGTTGGAAGCTTGATTCTTGGTTTGTCATCACGCTCTGGGCAGAAGGAAATTAAGGAATTCATGGATGCAGGGGCGAATCACTATGAAGTGAAACCTTTGTCAATTGAAAAGCTCAGTGCAATAGTTGATGTGATGAGGTGA 327 0.4006 MTNRKITQAQLKKIGVKSQAVTNGSEAVELHCNGQHFDLIIMDRDMPIMNGVEATKQLRSMGVGSLILGLSSRSGQKEIKEFMDAGANHYEVKPLSIEKLSAIVDVMR* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4530 108 SMART REC_2 1 104 IPR001789 GO:0000160
Lja1g4530 108 Pfam Response regulator receiver domain 3 104 IPR001789 GO:0000160
Lja1g4530 108 Gene3D - 1 108 - -
Lja1g4530 108 SUPERFAMILY CheY-like 2 104 IPR011006 -
Lja1g4530 108 CDD REC_hyHK_CKI1_RcsC-like 2 104 - -
Lja1g4530 108 ProSiteProfiles Response regulatory domain profile. 1 108 IPR001789 GO:0000160
Lja1g4530 108 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 105 - -
Lja1g4530 108 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 2 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4530 Lja-Chr1 59097776 59099133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4530 3 104 Response Regulator Gene Family AT3G04280 46.154 1.25e-23 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g4530 Response_reg 2e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4530 - - gmx:100794931 125.176