Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4527 ATGGAATGTTTTTGTGAAGAAGGCCAAGGAAAATTGACGAGGTTGGTAACAGTGGGAGCTGGAGAAGAAGATTACTACATTTTGAAGTCCAAAATCGGAGAGGGTTCTTCCTCTGCAGTGTGGAGAGCAGAGCAACGACCAAGCGGTGAAGAGGTGGCGGTGAAGCAGGTCCTCCTCTCTAAACTCAATCCTCGCCTCAAAGCTTGCTTGGACTGTGAGATCAATTTTTTGTCCTCTGTTAACCACCCCAACATTATTCGCCTTCTCAACTTCTTTCAGGCTGATGGATGTGTTTATCTGGTCCTGGAGTTTTGTGCTGGTGGGAATTTGGCTTCTTATATTCGATGTCATGGGAGAGTTCAACAACAAACTGCCAGAAATTTCATGCAGCAGCTTGGGTCTGGTCTAAAAGTGTTACACTCACACGGCATCATTCACAGAGACTTGAAACCTGAGAACATTTTGCTATCAAGCCATCAGGCTGATGCGGTGCTAAAGATAGCTGATTTTGGTCTATCAAGGAAAATCACACGCCCAGGTGAGTTTGTTGAGACTGTTTGTGGTTCTCCGTTATACATGGCTCCAGAAGTTCTTCAGTTTCAGAGATATGATAACAAGGTAGATATGTGGAGTGTTGGAGCCATTCTTTTTGAGCTTCTAAATGGCTATCCACCTTTTAATGGCAGAAACAATGTTCAGCTGTTGAATAACATTAGATCCTGTACCAGCCTTCCATTTTCTCCGCTGATTCTCTCAGGACTGGATCCTGACTGTCTTGATATTTGTTCAAGACTACTATGCTTAAATCCAGCGGAGCGCCTTTCTTTTGATGAATTTTACTGGCATAGCTTTCTGCGAAGAAAATTGATGAGAACTTGA 879 0.4346 MECFCEEGQGKLTRLVTVGAGEEDYYILKSKIGEGSSSAVWRAEQRPSGEEVAVKQVLLSKLNPRLKACLDCEINFLSSVNHPNIIRLLNFFQADGCVYLVLEFCAGGNLASYIRCHGRVQQQTARNFMQQLGSGLKVLHSHGIIHRDLKPENILLSSHQADAVLKIADFGLSRKITRPGEFVETVCGSPLYMAPEVLQFQRYDNKVDMWSVGAILFELLNGYPPFNGRNNVQLLNNIRSCTSLPFSPLILSGLDPDCLDICSRLLCLNPAERLSFDEFYWHSFLRRKLMRT* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4527 292 SMART serkin_6 26 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4527 292 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Lja1g4527 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Lja1g4527 292 SUPERFAMILY Protein kinase-like (PK-like) 24 287 IPR011009 -
Lja1g4527 292 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 27 281 IPR045269 GO:0004674|GO:0006914
Lja1g4527 292 PANTHER SERINE/THREONINE-PROTEIN KINASE ATG1T 27 281 - -
Lja1g4527 292 ProSiteProfiles Protein kinase domain profile. 26 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4527 292 Pfam Protein kinase domain 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4527 292 Gene3D Transferase(Phosphotransferase) domain 1 22 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4527 Lja-Chr1 59051293 59054191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4527 16 278 CBL-interacting serine-threonine protein kinases AT2G30360 35.766 2.10e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Lja1g4527 Pkinase 3.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4527 - - lja:Lj1g3v1289070.2 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4527 1 59051293 59054191 Lja1g4527 1 59051293 59054191 ECH