Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4524 ATGGCTCCTGACACCTCACCCTCCCCATCACTCAGACCGCTCAGCTTCTGCCGCCGCACGCATGCGCCGGAGTCGCCGGTGCTGAAGTGGAAGTCATTGGAGGAGGTAATGGCGAAGGCGCGCTACACGGTGGTGGAGCGCGAGGATTACGACGACCTCATCTGTGATCAATGCGGCTCCGGCGACCGGCCGGACGAGCTGCTCCTCTGCGACAAATGTGACAAAGGCTTTCACATGAAATGTGTGAGGCCGATCGTCGTCAGGGTTCCGATTGGATCATGGATTTGCCCTGATTGCTCCGGGATGACGAGTGTTAGGAGATTGACGCAGAAGAGAATATTGGATTTCTTCAGGATTCGGAGGCGTGATTTTGCTAGAAAATGCACAGCTCCTTCTAGGGATGCTAGGAGGCGTCGGAGAACTCGACCTCTGGTAGTCCAGAAGAAAAAGAGGAGACTGTTACCATTTATTCCTTCAGAAGATCCTGTCCAGAGACTGAAACAAATGGGTTCCCTTGCTTCTGCTTTAACAGCATTGCATATGGAATACAGTGATCACCTCACATACATGCCTGGAATGGCTCCTGGATCTGCTAATGACACCGATTTTGAACGTGGTGGCATGCAGACCCTCTCCATGGAAGACACAGAGACCTTAGAAAACTGCAAAGCTATGTCTACAAGAGGCGAATGCCCTCCCTTTATGGTTGTTTTTGATTCACGTGAAGGCTATACCGTGGAGGCTGATAGCCCAATCAAGGATATGACATTTATTGCTGAGTACACTGGTGATGTGGATTACATGAAGAATCGAGAATCGGATGATGGTGACAGTATGATGACACTTCTTCTTTCAAAAGAAGAGTCTCAAAGTCTTGTTATATGTGCTGATAAACGCGGAAACCTCGCTCGCTTTATCAGTGGCATCAACAATCATACCCTGGAAGGAAGGAAGAAGCAGAACTGTAAATGTGTAAGATACAATGTAAATGGTCAATCCCGAGTCTTTTTGGTTGCTATTCGTGATATTGCCGAGGGGGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATATCCGACTGAGAATTTTGTCTAG 1101 0.4796 MAPDTSPSPSLRPLSFCRRTHAPESPVLKWKSLEEVMAKARYTVVEREDYDDLICDQCGSGDRPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWICPDCSGMTSVRRLTQKRILDFFRIRRRDFARKCTAPSRDARRRRRTRPLVVQKKKRRLLPFIPSEDPVQRLKQMGSLASALTALHMEYSDHLTYMPGMAPGSANDTDFERGGMQTLSMEDTETLENCKAMSTRGECPPFMVVFDSREGYTVEADSPIKDMTFIAEYTGDVDYMKNRESDDGDSMMTLLLSKEESQSLVICADKRGNLARFISGINNHTLEGRKKQNCKCVRYNVNGQSRVFLVAIRDIAEGERLYYDYNGYEHEYPTENFV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4524 366 SMART PHD_3 54 100 IPR001965 -
Lja1g4524 366 CDD SET_ATXR5_6-like 229 366 - -
Lja1g4524 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 113 IPR013083 -
Lja1g4524 366 Gene3D SET domain 138 366 IPR046341 -
Lja1g4524 366 Pfam PHD-finger 54 100 IPR019787 -
Lja1g4524 366 ProSiteProfiles SET domain profile. 232 354 IPR001214 GO:0005515
Lja1g4524 366 PANTHER HISTONE ACETYLTRANSFERASE 24 364 - -
Lja1g4524 366 ProSiteProfiles Zinc finger PHD-type profile. 52 102 IPR019787 -
Lja1g4524 366 CDD PHD_RSF1 55 99 - -
Lja1g4524 366 SUPERFAMILY FYVE/PHD zinc finger 42 107 IPR011011 -
Lja1g4524 366 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 24 364 - -
Lja1g4524 366 ProSitePatterns Zinc finger PHD-type signature. 55 99 IPR019786 -
Lja1g4524 366 SUPERFAMILY SET domain 225 354 IPR046341 -
Lja1g4524 366 Pfam SET domain 268 354 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4524 Lja-Chr1 59033735 59037848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4524 52 99 C2H2 Transcription Factor Family AT3G01460 39.583 3.50e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g4524 SET 7.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4524 K24406 - gmx:100785817 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4524 1 59033735 59037848 Lja1g4524 1 59033735 59037848 ECH